Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00594 ATGGGGAAAGGAAAACCTAGGGCAGTCGAAAAAGGGGTTTTAGGGCACGGTTCTACTGTTTCTTCATCTGGGGCATTGAACATACCACAAGGTCCTGTCTTTTATCCCACTGAAGAGGAATTTAAGGACCCTTTAGAGTTTATAGACAAGATTAGACCAGAAGCAGAGCCGTATGGGATCTGTCGAATTGTTCCGCCAAAGAGTTGGAAACCCCAATTTAACCTAGACTTAGACTCATTCACCTTTCCGACAAAAACACAAGCGATTCATCAGTTGCAAGCGCGGTCAGCCTCTTGTGATCCAGAGACATTTGAATTGGAGTATAATCGGTTTTTGGAAGATCACTGCGGGAGGAAACAAAAGAAGAGGGTGGTTTTCGAAGGAGAAGAATTGGATTTGTGTAAGCTTTTTAATGCTGTGAAGCGGTATGGAGGTTATGATAAGGTTATTAAGGAGAAGAAATGGGGGGAAGTTTTTAAGTTTGTGCGTTCAGTTGCAAAGATTTCTGAATGCTCCAAGCATGTTTTGTGTCAGTTGTATCGAGAGCATTTATATGATTATGAGAATTATCACAGTCAGTTGAACCGCGAGAAGCCTGCAAAAAAATGTAAGAGGGGAATGCGTGGGGATAGAAATGGTGTACAGGAATCAGCCTTTTCAGCTTCCAAAAGGAGACGGAAGACTTCTAACAGTGAGAGAGTTAAAGTGGATAAATTAGAGAAGGAAGAAGAGTTTGATCAAATATGCGAACAATGCAGAAGTGGGTTGCATGGGGAAGTTATGCTTTTGTGTGATAGGTGTAATAAGGGCTGGCATATTTATTGTCTTTCACCACCTCTAAAGCAGGTCCCACCTGGGAACTGGTATTGCTTGGAATGCGTGAATTCTGATAAAGATAGCTTTGGTTTTGTGCCTGGTAAGTGTTTCTCATTGGAAGCTTTTAGGCGTCTGGCTGATCGGGCCAAGAGGAAATGGTTAGGGTCAGCATGTGCATCCCGATTGCAAATAGAGAAAAGGTTTTGGGAAATTGTGGAGGGGTTGGCGGGTGAAGTTGAAGTTATGTATGGCAGTGACTTAGATACTTCTTTGTATGGGAGTGGTTTCCCTCGCATCAATGATCCAAGGCCACCATCAGTTGCGGTTGACGTATGGGATGAGTGTTCTGCAAGTCCATGGAATCTCAATAACTTACCCAAATTGCGAGGATCAATGCTTCGGGCAGTTCAAGATAATATTGCTGGTGTCATGGTGCCCTGGTTGTATATTGGGATGTTGTTTTCATCCTTTTGTTGGCATTTTGAAGACCACTGCTTTTATTCAATGAATTATTTACACTGGGGAGAGCCAAAATGTTGGTATAGTGTCCCTGGTACTAAAGCCCATGCATTTGAGCAGGTCATGCGGAACAGTCTTCCAGATTTATTTGATGCGCAACCAGATTTGCTCTTTCAACTTGTGACCATGCTGAATCCATCCGTTTTGCAAGAAAAAGGCGTTCCAGTGTACACTGTGCTGCAGGAGCCTGGAAATTTTGTCATAACCTTTCCCAGGTCTTACCATGGAGGTTTCAATTTTGGCTTAAATTGTGCTGAAGCTGTTAATTTCGCCCCTGCTGACTGGCTGCCTCATGGTGGATTCGGAGCAGAACGTTATCGTTTGTATCACAAGCCTGCAATTTTATCTCACGAGGAACTTCTTTGTGTGGTAGCTAAGGTTGCAGATTCAAACTTTTCACTGCCTTTGCTTCCATTCTTGCATAGCGATTGTGATGGCAAAGTATCACCTTATTTGAAGAAAGAATTGCTTAGAAATTTCACTAAAGAGAAAACTTGGAGAGAACAACTGTGGAGAAATGGAATTGTTAAATCATCTCCAATGTCTCCACGGAAACGGCCTGAGTATGTGGGTACTGAAGAGGAAGAGGATCCGACATGCACTATATGCCAGCAGTGTTTGTATCTTTCAGCCGTTGTATGCAGCTGCAGGCCATCTGCTTTTGTCTGTCTGGAGCATTGGGAACACCTCTGTGAATGCAACCCTAGCAAACATCGTCTTCTTTATCGTCATACGCTTGCTGAATTGAATGACTTGGTGCTTATGGCGGATGAATGTAATTTTGAGGAGACACCCCGAAGTAGAACTGGCCGGCGAGAATATTCATATTTTAATGATTCAAATGCTACGACGAAAAAGGTTAAAGGTGGCCGTTTTTCTCATGCTCAACTTGCAGAAGAATGGCTTTTGAGCGCGTCTAAGATTCTTCAAAACCCATTTTTGGATGCTTCTTATGTTAGTGCACTTCGGAGTGCTGAACAGTTTCTTTGGGCTGGTCCTGAAATGAATCCGGTGCGGGACATGACAAAGAATTTGATTAAAGCTCAGAAGTGGGCACTGGACGTAAGGAGTTGTCTTTCTAAAGTTGAAACCTGGTTGCATCGTTGTGACAATGGTATAGAGAAAGTGACCTTGGGAGATGTCGAAAATTTGCTGAGTTTTGATTCTTTGCCCTGTAATGAGCCTGGACATCTTAAATTGAAGGTTTATACAGAGGATGCGAGGATGTTGGTTGTGGAGATAAAATCTGCTCTTTCAACATGCTCACGTGTCTCGATTGCTGAGTTGGAAACATTATACTCCCGAGCAAGGGAATTTCCAATCTATTTAGAAGAAAGTGGAAAGTTAGCGGAAGAGATCACTTTGGCAAAGGTTTGGATAAATCTTGTAAGGCAATGCGTCTCAGAGGAAAGACCCGCCGCAATTGAGGTTGATGTCCTTAACAAGTTAAAGTCAGAGATGCTGGAGCTTCATATTCAACACCCAGAAATGGAATTGCTGTTGGAGCTGTTAAGGCAGGTCGAATCATGGCAAATTCGATGCTGTGAAATGTTGAAAGGTCCTGTCAGTTTGAAGGCACTTGAAATCCTTCTGCGGGATGCAAATAATTTCACAGTTGGCATTCCAGAGTTGAAGCTTCTGCGGCAATATCGTTGTGATGCTGTCTCCTGGATTTCCCGCTTTCATGATGTTCTAGTGAACATCCAGGAAAGGGAAGATCAAGATAGAGTTGTTGATGAGTTAAATTGCATTCTGAAGGATGGAGCATTGTTGAGAGTACAGGTTGATGAGTTGCCCTTAGTTGAGGTAGAACTAAAGAAGGCATGTTGCAGGAGAAAAGCTCTGAAGGCACGTGGCACTCAAATGCCCCTGGACTATATCCAGCAACTAATGTCTGAGGCTGTTATACTACATATTGAGAATGAGAAGTTGTTTGTTGATATTTTTGGAGTACTTGGGGCTGCTATTTCTTGGGAAGAAATAGCCAGACAAGTTCTTGGGACTGTGGCTCAGATGTCTGAGTTTGAGGATGTTTTAAGGATGTCAGAAAACATTTTTGTGATTTTACCTTCTCTCCATGATGTCAAAGAAGCACTATCAATGGCCAAATCTTGGATAGGAAGATGTCAGCCGTTTCTAGCGTCTACTCTTTCTGCTGGGCATGCTTCGAATTCTTTGCTGGAAGTAGATTCCCTGAAGGACCTAGTTGCTCAGTCAAAGCTTCTGAAGGTGTCTTTGAAAGAACCAGAGATGCTTCAGACCATTTTGAAAGATTGTGAGGCTTGGGAGCATGATGCCCGTGCTCTTCTAGAATGTGCAGAGTCTTTATTTACGATGCATGATATTGACACTACAATAGCCAATGGTCTTACCATAAGAATTGAAGAATTACTTACTAAAATCCATTCTGTCACAAATGCTGGGTTATCTTTAGGTTTTGACTTTTATGAGATTTCAAAACTTCAAAATGCTTCCACCAAACTGCAATGGTGCTTGAAGGCCCTCTCGTTATGCTCCAGCGCTCCTGTGCTTGAGGAGGTAGAGAGCTTGATAGAAGATGCAGAATACCTTTCCGTCTCATTTGCCTGCAACAATTTGGTCAACAAGTTGATTGATGGGGTGAGATGGATTAGGAAAGCATTGGAGGTAATTCCTGAACGCTTTATGCAGAGGAGGTGCAAATTGACCGATGTTGAAGAAATTCTGGAAGAAGCTCAGAGGATTAAAGTACCCATTTCAGTGATGGTTGCTCGACTTGTAAATGCTGTTGAGACACACAAGTCCTGGAAAGAGCAGGTGCATCTATTCTTCAATTCTAAGTCAAGGGAAAGATCTTGGTCTGTATTGTTACAGCTAAAGGACCTTGGGAAGTCAGATGCCTTTGATTGTCCAGAGCTAGATAATGTTGCAATTGAAATTGGAAAAGTTGAGAAATGGAGGCTACGTTGCAAGGACACTGTTGAGCCTTCAGTTGGTGATGTGAATTCATTGTTTGGTGCTCTAGTAAAGATCAAACATACTCTGGATAGATCACTACATTTATATCAAGATTCAAAGGGCTGCAAAGTGGGAGCTTTATGTGTGTGCTCCTCCAGTGATTCTGAAGATCAAGAACTGATAATGTGTTTAACATGCAAGGACATGTACCATCTTTCATGCCTGGGGTCTACACTTGTTAATATAAGTGCTGCAGAAGAATATATATGCCCTTATTGCCTTTGTATGGAGAATGGAGCTATTTCTAGAAGTGGATGCCGAACTTTGATATCCAGGGGAAAGCGTCCTGAACTGAAGAAGCTCACGGAACTTCTATCTGATGCCAAGGATTTTTGCATACGGATTGAAGAAATAGATATGGTAGAAAAAGTTGTGGAACAAGCTCTTGCTTGCAATGTGCGCCTAAAGACAATAGTGGATTGTGTCCATGCTTATCTTGATGAAGATCTCAGTTCCGTCTCTGAAGGACTTTTGATTGCTTTGAAGGCAGTAGCAGTGGCTGGTGTTTATGATCATGATGGTAGCTGCAACCTTGAGTTAGCATTAGCTAGATACTTGTGGAAAATCAGAGTCAAGAAACTGTTAGAGAGTTCAAAGAAGCCCCTGATCCAACAGATTCAGCGCATGCTGAAAGAGGGGTCAACAATAAACATACTATCTGAAGATCACTTCATGCAGAAACTTACAAAAGTGAAGTGCATTGGATTGCAATGGGCAGATCGTGCCAAGAAGGTTGCCTTTGATTCTGGGGCACTTGGTTTGGATGAAGTGTTTAAACTGATTAAAGAGGGTGAAAATTTACCTGTCCACTTTGAAAAGGAGCATAAGTTATTAAAAGATCGAAGTGAGCTTTATTGTATTTGTCGAAAGCCCTACTCGTCTAATCAGAGATCAATGATTGCTTGTGATAAGTGTGATGAGTGGTATCATTTCGATTGCATTAATTTGCGTGAACCACCACCCAAGATCTACGTCTGTCCTGCTTGTAAACCACCAACGGTGGGCCATGAGGAAAGATCATGTAGCACCAATGATGTGGGGGGGCCTCAGACACCACCTCCTCGGTACACCGAATCAAAGAGACCCAGAAAATCAAGGTCTACTCTGCAGCGGAAGATGCTGGTTGTTACTGATCTTAGTAACATCTTGAGGCATTCTAATGGTATTGATAATTTGTGGTGGAGAAACCGGAAGCCATTGAGGAGAACATCTAGAAAACGTGCTGAGCTCGAAAGCCTCTCGTCATTTTTCCATTTGGAACAGTAA 5598 0.4252 MGKGKPRAVEKGVLGHGSTVSSSGALNIPQGPVFYPTEEEFKDPLEFIDKIRPEAEPYGICRIVPPKSWKPQFNLDLDSFTFPTKTQAIHQLQARSASCDPETFELEYNRFLEDHCGRKQKKRVVFEGEELDLCKLFNAVKRYGGYDKVIKEKKWGEVFKFVRSVAKISECSKHVLCQLYREHLYDYENYHSQLNREKPAKKCKRGMRGDRNGVQESAFSASKRRRKTSNSERVKVDKLEKEEEFDQICEQCRSGLHGEVMLLCDRCNKGWHIYCLSPPLKQVPPGNWYCLECVNSDKDSFGFVPGKCFSLEAFRRLADRAKRKWLGSACASRLQIEKRFWEIVEGLAGEVEVMYGSDLDTSLYGSGFPRINDPRPPSVAVDVWDECSASPWNLNNLPKLRGSMLRAVQDNIAGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGEPKCWYSVPGTKAHAFEQVMRNSLPDLFDAQPDLLFQLVTMLNPSVLQEKGVPVYTVLQEPGNFVITFPRSYHGGFNFGLNCAEAVNFAPADWLPHGGFGAERYRLYHKPAILSHEELLCVVAKVADSNFSLPLLPFLHSDCDGKVSPYLKKELLRNFTKEKTWREQLWRNGIVKSSPMSPRKRPEYVGTEEEEDPTCTICQQCLYLSAVVCSCRPSAFVCLEHWEHLCECNPSKHRLLYRHTLAELNDLVLMADECNFEETPRSRTGRREYSYFNDSNATTKKVKGGRFSHAQLAEEWLLSASKILQNPFLDASYVSALRSAEQFLWAGPEMNPVRDMTKNLIKAQKWALDVRSCLSKVETWLHRCDNGIEKVTLGDVENLLSFDSLPCNEPGHLKLKVYTEDARMLVVEIKSALSTCSRVSIAELETLYSRAREFPIYLEESGKLAEEITLAKVWINLVRQCVSEERPAAIEVDVLNKLKSEMLELHIQHPEMELLLELLRQVESWQIRCCEMLKGPVSLKALEILLRDANNFTVGIPELKLLRQYRCDAVSWISRFHDVLVNIQEREDQDRVVDELNCILKDGALLRVQVDELPLVEVELKKACCRRKALKARGTQMPLDYIQQLMSEAVILHIENEKLFVDIFGVLGAAISWEEIARQVLGTVAQMSEFEDVLRMSENIFVILPSLHDVKEALSMAKSWIGRCQPFLASTLSAGHASNSLLEVDSLKDLVAQSKLLKVSLKEPEMLQTILKDCEAWEHDARALLECAESLFTMHDIDTTIANGLTIRIEELLTKIHSVTNAGLSLGFDFYEISKLQNASTKLQWCLKALSLCSSAPVLEEVESLIEDAEYLSVSFACNNLVNKLIDGVRWIRKALEVIPERFMQRRCKLTDVEEILEEAQRIKVPISVMVARLVNAVETHKSWKEQVHLFFNSKSRERSWSVLLQLKDLGKSDAFDCPELDNVAIEIGKVEKWRLRCKDTVEPSVGDVNSLFGALVKIKHTLDRSLHLYQDSKGCKVGALCVCSSSDSEDQELIMCLTCKDMYHLSCLGSTLVNISAAEEYICPYCLCMENGAISRSGCRTLISRGKRPELKKLTELLSDAKDFCIRIEEIDMVEKVVEQALACNVRLKTIVDCVHAYLDEDLSSVSEGLLIALKAVAVAGVYDHDGSCNLELALARYLWKIRVKKLLESSKKPLIQQIQRMLKEGSTINILSEDHFMQKLTKVKCIGLQWADRAKKVAFDSGALGLDEVFKLIKEGENLPVHFEKEHKLLKDRSELYCICRKPYSSNQRSMIACDKCDEWYHFDCINLREPPPKIYVCPACKPPTVGHEERSCSTNDVGGPQTPPPRYTESKRPRKSRSTLQRKMLVVTDLSNILRHSNGIDNLWWRNRKPLRRTSRKRAELESLSSFFHLEQ* 1866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00594 1865 ProSiteProfiles Zinc finger PHD-type profile. 1727 1776 IPR019787 -
Eupl08g00594 1865 ProSitePatterns Zinc finger PHD-type signature. 1730 1773 IPR019786 -
Eupl08g00594 1865 ProSiteProfiles Zinc finger PHD-type profile. 246 296 IPR019787 -
Eupl08g00594 1865 Pfam jmjN domain 32 65 IPR003349 -
Eupl08g00594 1865 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1468 1523 IPR013083 -
Eupl08g00594 1865 SUPERFAMILY Clavaminate synthase-like 368 567 - -
Eupl08g00594 1865 SUPERFAMILY FYVE/PHD zinc finger 1471 1519 IPR011011 -
Eupl08g00594 1865 SMART JmjN_1 30 71 IPR003349 -
Eupl08g00594 1865 SUPERFAMILY FYVE/PHD zinc finger 239 297 IPR011011 -
Eupl08g00594 1865 ProSiteProfiles ARID domain profile. 98 192 IPR001606 GO:0003677
Eupl08g00594 1865 Gene3D Cupin 32 537 - -
Eupl08g00594 1865 Pfam C5HC2 zinc finger 645 697 IPR004198 -
Eupl08g00594 1865 CDD ARID 100 188 - -
Eupl08g00594 1865 ProSiteProfiles Zinc finger PHD-type profile. 1469 1520 IPR019787 -
Eupl08g00594 1865 ProSiteProfiles JmjN domain profile. 31 72 IPR003349 -
Eupl08g00594 1865 Pfam ARID/BRIGHT DNA binding domain 109 188 IPR001606 GO:0003677
Eupl08g00594 1865 Pfam PLU-1-like protein 1171 1431 IPR013637 -
Eupl08g00594 1865 Pfam PLU-1-like protein 859 1216 IPR013637 -
Eupl08g00594 1865 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1713 1775 IPR013083 -
Eupl08g00594 1865 MobiDBLite consensus disorder prediction 1 23 - -
Eupl08g00594 1865 SUPERFAMILY FYVE/PHD zinc finger 1716 1774 IPR011011 -
Eupl08g00594 1865 CDD PHD_SF 1472 1517 - -
Eupl08g00594 1865 PANTHER LYSINE-SPECIFIC DEMETHYLASE 27 810 - -
Eupl08g00594 1865 MobiDBLite consensus disorder prediction 1781 1813 - -
Eupl08g00594 1865 SMART PHD_3 248 294 IPR001965 -
Eupl08g00594 1865 SMART PHD_3 1729 1774 IPR001965 -
Eupl08g00594 1865 SMART PHD_3 1471 1518 IPR001965 -
Eupl08g00594 1865 FunFam Predicted protein 354 557 - -
Eupl08g00594 1865 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 237 305 IPR013083 -
Eupl08g00594 1865 FunFam Transcription factor jumonji (JmjC) domain-containing protein 17 121 - -
Eupl08g00594 1865 SMART bright_3 99 193 IPR001606 GO:0003677
Eupl08g00594 1865 SMART ARID_2 95 188 - -
Eupl08g00594 1865 SUPERFAMILY ARID-like 81 196 IPR036431 GO:0003677
Eupl08g00594 1865 Pfam PHD-finger 1729 1775 IPR019787 -
Eupl08g00594 1865 Pfam PHD-finger 1472 1519 IPR019787 -
Eupl08g00594 1865 Pfam PHD-finger 248 295 IPR019787 -
Eupl08g00594 1865 ProSiteProfiles JmjC domain profile. 386 552 IPR003347 -
Eupl08g00594 1865 Gene3D - 84 192 IPR036431 GO:0003677
Eupl08g00594 1865 CDD PHD_RSF1 249 293 - -
Eupl08g00594 1865 SMART cupin_9 386 552 IPR003347 -
Eupl08g00594 1865 ProSitePatterns Zinc finger PHD-type signature. 249 293 IPR019786 -
Eupl08g00594 1865 Pfam JmjC domain, hydroxylase 419 535 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00594 Eupl-Chr8 11437342 11509393 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00594 39 95 JUMONJI Transcription Factor Family AT4G20400 47.541 3.76e-09 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Eupl08g00594 PLU-1 7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00594 K11446 - ming:122064092 2741.45