Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00559 ATGTGTTGGGCTATGGATACCGGGCTCCAAAACCAGGAGGGGGTGCAAGAAAACTACCTAAGGAAAAAGCTTGCTGTTGCTGTCAGGAGCATTCAGTGGAGCTATGCAATCTTCTGGTCCACCTCAACTAGACAACAAGGTGTGTTGGAATGGGGTGATGGTTACTATAATGGAGACGTAAAGACAATGAAGACAGTGCAACCCATGGAACTCAATGCCGACCAAAAGGGTTTGCAAAGGAGCGAACAGTTGAGAGAGCTGTATGAATCTCTCTCGACGTCCGACACAAATCAGCAAACTAGGAGGCCATCAGCTGCATTGTCTCCTGAAGATCTCACGGATGCGGAGTGGTACTACTTGGTTTGCATGTCCTTCACATTCAAACCTGGCCAGGGGTTGCCAGGAAGAGCATTAGGAAACGGTCAACACATTTGGCTAAGCAGTGCTCATTGTGCAGATACCAAAGTCTTCTCCCGCTCTCTGCTAGCTAAGAGCGCATCTATTAAGACTGTTGTATGCTTTCCCTTCTTGTGTGGGGTGATCGAGTTGGGTGCGACTGAACTGGTCTTGGAGGACCTCAAGCTGCTTCATCACATTAAAACTGCCTTCTTGGAGTTCTCAAAGCCCATTTGCTCCGAGGAATCTTCTTCAAGTCCACCAAATGTAGATAAAGATGAAGACCCCGTGAATGCTGCGCCTCCTCATCAGGTAGTTGATAACATGGCTTTAGAGAGACGTACTTCGGTGGCAGGCTGTGAGTTGCAACCAGATGGTGGGACCCAAGCATTCCCAGTCTCTCTCCCTTCCTACATGCCTAAAGAAGTTGAATTTGATCAGCATAGGATCGCGGAATTACGTGCAGATGTCTATGACGAAGTAAAAACGGGTTCTCCCCATGACAGTTCAAATGGGTGTGGGCCCAATCAACACACTGCAGATTCTTTCAAGTTGGAAAGCATAAATGATGGGGCCGCTCAAGTTGAGGGCTGGCAGTTAATGGATGACGAGTTCAGCAATTGTGTGCATGGTTCCATGAATTCGAGTGACTGTATATCTCAGACATTTTTGAATGCTGAGAAGGCTGTCTCGTCTCTGAAGAGGGAGAAAGTAAATAATCCTTGTCTTCAAGACATTCAACAATGCAGTCACACTAAACTTAGCTCGTTGGAGCCTAGAAATGATGACCTACATTACCCAAGAACTCTCTCTGCCATTTTAAAAAACTCCAACCCGTTAATCGTGGCACCTTGCTTTCGCAGTAGTAATCTCGGACCCACTTTTGCAAGTTGGAAGAAAGGTGGCCTGGTGGATGGTCAGAAGCCACAGATTGGCACCCCACAGAAAATGTTAAAGAAGATTTTATTCAAAGTTGCTGGGATGCATGGCGGTTGCTCGTTGAAGTCCCGAGAAGAATGCACTGGCAAGGATAGGCTTCGGAAATCAGAAGGGGTTGATATTGGTTTGAGCCATGTATTGTTGGAGAGGAAAAGAAGAGAGAAACTGACTCAGAAGTTTCTTGTTCTCAGATCACTGGTTCCTTCTATCAGCAAGTTTGACAAAGTATCTATCCTTGGTAACACAATAGAGTACCTGAATGAGCTCGAGAGAAGGGTAGAAGAGTTGGAATCTTGCAGGGAACTTGCAGAGTTTGAAGCAAGAGGAAGGAGGAAAAACCCAGATATGGTAGAGAGAACATCTGACAACTATGGCAACAATGACATTGCTAATAAAAAGAAGCCTTTGTTAAACAAGAGGAAGGCTTGCAACATTGATGAAACGGTCTCCGAGCTCAATTGGGTTTTATCCAAAGATGGTTTAGCAGCAGATGTGACTGTCAGCATAATCGACAAGGAGGTTCTGATTGAAATGCAGTGTCCATGGAGGGAATGTTTGCTTCTCAACATCATGGATGCAATAAGCAATCTCCACCTGGATGCTCACTCAGTTCAATCATCCACTACTGACGGAATTCTCACTCTGACTCTAAAATCTAAGAACTTGTTGCAGTTTAGGGGAGCAGGAGCTGCATCAGCAGGGATAATCAAACAAGCGCTCCAGGGAATTATCTCCATTTGA 2076 0.4562 MCWAMDTGLQNQEGVQENYLRKKLAVAVRSIQWSYAIFWSTSTRQQGVLEWGDGYYNGDVKTMKTVQPMELNADQKGLQRSEQLRELYESLSTSDTNQQTRRPSAALSPEDLTDAEWYYLVCMSFTFKPGQGLPGRALGNGQHIWLSSAHCADTKVFSRSLLAKSASIKTVVCFPFLCGVIELGATELVLEDLKLLHHIKTAFLEFSKPICSEESSSSPPNVDKDEDPVNAAPPHQVVDNMALERRTSVAGCELQPDGGTQAFPVSLPSYMPKEVEFDQHRIAELRADVYDEVKTGSPHDSSNGCGPNQHTADSFKLESINDGAAQVEGWQLMDDEFSNCVHGSMNSSDCISQTFLNAEKAVSSLKREKVNNPCLQDIQQCSHTKLSSLEPRNDDLHYPRTLSAILKNSNPLIVAPCFRSSNLGPTFASWKKGGLVDGQKPQIGTPQKMLKKILFKVAGMHGGCSLKSREECTGKDRLRKSEGVDIGLSHVLLERKRREKLTQKFLVLRSLVPSISKFDKVSILGNTIEYLNELERRVEELESCRELAEFEARGRRKNPDMVERTSDNYGNNDIANKKKPLLNKRKACNIDETVSELNWVLSKDGLAADVTVSIIDKEVLIEMQCPWRECLLLNIMDAISNLHLDAHSVQSSTTDGILTLTLKSKNLLQFRGAGAASAGIIKQALQGIISI* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00559 691 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 20 203 IPR025610 -
Eupl08g00559 691 PANTHER TRANSCRIPTION FACTOR TT8 9 689 - -
Eupl08g00559 691 Pfam Helix-loop-helix DNA-binding domain 489 535 IPR011598 GO:0046983
Eupl08g00559 691 Gene3D - 487 550 IPR036638 GO:0046983
Eupl08g00559 691 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 488 551 IPR036638 GO:0046983
Eupl08g00559 691 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 485 534 IPR011598 GO:0046983
Eupl08g00559 691 SMART finulus 491 540 IPR011598 GO:0046983
Eupl08g00559 691 Coils Coil 531 551 - -
Eupl08g00559 691 MobiDBLite consensus disorder prediction 211 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00559 Eupl-Chr8 10385587 10391066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00559 5 691 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 45.881 0.0 547
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl08g00559 bHLH-MYC_N 3.4e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00559 - - nnu:104596056 907.901