Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00554 ATGCAGATAGTAAAACTAAGATCCTGTAACAGTCTAGATATGATGAGGCCTGAGCAGAAGGTTGGGAAGCCAGAGGAGGGAAATGACTCCTTTGACAATTTCATCAGACAAGCAATCGGAAAAGAACCTGCACTTACTTTCTCAAGGGCTAGTGATAGCCCTGTTCATTGGATTCAATTACTTCATGCTTTAGATCAACAAGGTACTAACAGACTTTCTAAAGGTCCAAAGTTTAACAACACTGTTGAAGGGAAGGAACGTTTGCTAGAGCATTGCAATGATGCGAGCTCCTTTGAGCCTGAAAAATATCTCCCGGGATGGCCCTTGTTGTCTCCATCTAAAGTGCAGATGCAAAAGTGTGATAAATGTTCCCGCGAATTTTATTCACCCATTAACTACCGAAGGCATATACTTGTGCACCGTCGCTCTTTGAACATTGATAAGGACTCTCCTAAGAATAAAGATTTCTTGGGTGCATTTTGGGATAAGCTCTCTTTGGATGAAGCAAAGGAAATTGTATCATTCAAGAACTTGACATTGGAGGAAGTTCCTGGATCTTCAATTATAAGGACATTGACGTCATTTATCCGTAAACTGGGGGTTTCTTCGCTGCCACAAGTTTATGTGAAGGCTGGTGAAGCTCTTTTGGATGTCATCCAAGCTAGGACTTCCAAGTTTCCTATGTCCTCACAGGAATTATTCAGTATCCTTGATGATGCAAGTGAGAAGACATTCTTGTGTGCTGGCACAGCTGTCTCCGTGCAAAAATTTGTGTTTGATGGTGAAGCTGGGAAGATTGGTCTTGAGATGAAGAATTTAGTAGCTTTCACCGTTTTTTTGGTGGAAAAAATTTTGGTAAAAGCGTGGCTTGCCGATAAGGATTCAGAAGCTTTAAGGTGCCAGAAATTGTTAGTGGAGGAAGAGGAAGCTGCTCAGAAAAGGCAAGCTGAGCTCTTGGAGAGGAAACGGCTGAAGAAGCTTAGGCTGAAAGAGCAGAAGGCAAAGGAGGAAATTGAGAGGGACAAGGCAGACTTCAAGGAAGGTTCGCCTGATTCCTTGGAGGGTGTACCTTCTTCAGAAACATCCAGTCCATCGGCTGCCTCCAACTCCCATTCACATACTCAAGAAGCACCATCGATTCCTGTTCCACTGTTTCTGGAGCCTGTCCGACTTCTAAACACTGATGTTGAAGCAGAAACCAGGTTCCACTCAGGACTTGGTGGTGCCAATATTGACATGGCTTCTAACAATTCAAATTTTGAGCACCGAATGCAGCAGGGAAGTGGCCGGGGGCAGCTAATTGTTGCTCGACGGCCAGGGTCGAAGCCACACCGAGGTGCTCTGAATGGCTTCCATTCAGATCAGGTTCTTCCAGTATCAAAGTTGGGAGCCATCCAGAAGCATGGAACGTACAAGGAGCAGAGGGCTGCTTTTCTAGCCAATGGCCAAAAGGTCTGGACACGGAAAACCAAGCCTGAGAATGAAGGAGAGGGCTTGCATGGAAGTGTACAAAGAGAACCAAGATATCAACCAGATCTGAATGGGAACTATGAGGTGTTGATAGGTTCTATCTCGGTCACACTTGGAGATTGCAGTTGCCGGCATGAGGGTGATATTCTGGCTGTCTCTCTCTTTCCGTGTGAAGCAGATCAGCAACCCCCGAAGCAGAATAATGTCCAAGAGAAGCCTGTCAAGCCTGATTCTGGTCAAAATGGCATTAATAGTTCGATGGTGAAGCTCTGGAAGCCAGTAGGCAGGCATGAAGCTGGGAATTTCATGACAGTTCAAAGCGACATTAGAGAAGCCAAAGTGGATGTGTTTTCTGGCAAAGCTGATGACAGAACACGAACGGATGAAAACTGTCTGCCATGTAATGCTACAAATGACAGCAGTGCTGGGATTAGGAAGGACATTTCAACAGTGCTGGAAGAAGGTGCAGATCCAATAGGCCTGAGATTGTTCTCTAGCCGTGCTGCAAAGGCTTTCCTCGCCCAGCGATGGAAGGAGGCAATTGCAGCGGATCATGTGAAGCTGGTCATATCCCCAGAAACAGAACCGCCAGGTTGTCCTGAGCTCCAAGACGATGCTCAAGGGGCAGCAGAATCAGATTACTGCAAACGCAAAATCCTTGGCAATGCTGAAAACAGACTGGCTGGTGTTGGTCCAATTGCGCATGCGGCCACCACCGGAGCGAGTAAAGCCAAGATCAGAGCAAAATTTGAAAAGGGATGTAGGCTAAAGTACATCCCTAAGCAGAGGAACGGTACCTGA 2271 0.4619 MQIVKLRSCNSLDMMRPEQKVGKPEEGNDSFDNFIRQAIGKEPALTFSRASDSPVHWIQLLHALDQQGTNRLSKGPKFNNTVEGKERLLEHCNDASSFEPEKYLPGWPLLSPSKVQMQKCDKCSREFYSPINYRRHILVHRRSLNIDKDSPKNKDFLGAFWDKLSLDEAKEIVSFKNLTLEEVPGSSIIRTLTSFIRKLGVSSLPQVYVKAGEALLDVIQARTSKFPMSSQELFSILDDASEKTFLCAGTAVSVQKFVFDGEAGKIGLEMKNLVAFTVFLVEKILVKAWLADKDSEALRCQKLLVEEEEAAQKRQAELLERKRLKKLRLKEQKAKEEIERDKADFKEGSPDSLEGVPSSETSSPSAASNSHSHTQEAPSIPVPLFLEPVRLLNTDVEAETRFHSGLGGANIDMASNNSNFEHRMQQGSGRGQLIVARRPGSKPHRGALNGFHSDQVLPVSKLGAIQKHGTYKEQRAAFLANGQKVWTRKTKPENEGEGLHGSVQREPRYQPDLNGNYEVLIGSISVTLGDCSCRHEGDILAVSLFPCEADQQPPKQNNVQEKPVKPDSGQNGINSSMVKLWKPVGRHEAGNFMTVQSDIREAKVDVFSGKADDRTRTDENCLPCNATNDSSAGIRKDISTVLEEGADPIGLRLFSSRAAKAFLAQRWKEAIAADHVKLVISPETEPPGCPELQDDAQGAAESDYCKRKILGNAENRLAGVGPIAHAATTGASKAKIRAKFEKGCRLKYIPKQRNGT* 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00554 756 MobiDBLite consensus disorder prediction 354 377 - -
Eupl08g00554 756 MobiDBLite consensus disorder prediction 491 510 - -
Eupl08g00554 756 MobiDBLite consensus disorder prediction 337 380 - -
Eupl08g00554 756 ProSitePatterns Zinc finger C2H2 type domain signature. 120 140 IPR013087 -
Eupl08g00554 756 MobiDBLite consensus disorder prediction 552 574 - -
Eupl08g00554 756 Coils Coil 319 344 - -
Eupl08g00554 756 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 754 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00554 Eupl-Chr8 10232428 10248033 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00554 25 753 C2H2 Transcription Factor Family AT4G25610 38.399 1.36e-126 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl08g00554 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00554 - - nnu:104586368 875.159