Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00543 ATGTTTCAATCTGATCTCTTCCCACTCCTTCTGATCACCTTCAGCATCCTCAGTGCCAATTCCCTAGATTTCCATACTGCGAATTGTCCTACTTTCCTCTGTGGGAACATTAACATTGCCTACCCTTTCTGGATCCATAACAAAACAAGTCCTGAACACTGCGGATACCCAGGCTTGGGCCTCTCCTGCTCCTCCAACCGATACAACAGTCCTGTAATCCTCCTCTCTAACAACGCTTCTTACTATGTGAAAAGTATCGATTATAATAGTAACATCATCACCGTTGTTGACGTAGACGTAGTAGAGCAAAGCTGTCCAAGAACACGTCGCAACGTCACGCTGGACTCGACACCAGTCCTAGACTTGAAGGATGATCAGAAACTCACATTTTTCTTCAATTGTTCTTTGAATCCTTCTTCGAAGTCCTCCCTTGAGTGTCTAAGCAACAATACGAGACGTTCTTATGTTTTCAGTGCTAAGGATCAGATTCCGAAGTTGGATTGGTATGGGAACTGTGAGGAGAGCGTGGTGGTACCGGTGATGGCGATTAATGGTCTCTCTATTACAGGTTTCGGACCGTCCTTGCAGGAGGGATTTCACTTGATTTGGAGTTCGAGTGACAACTGTAAGGTGTGCGAGAAAAATAATGGACATTGCTGGTACAATCAAACGTCTAGCGAGTCTGTTTGTGTTTGCCCAGATGGAAGGAAAGTCAGAACTGGAAGCTGTATTCCCGGCATAAGCCCCAATGGTAAGAAAGTCCTACTAGGTGCATCAGTTACAGTTTTGGCAATAATAGTTCTAATCTTAGTCCTCGTGCATAGAAAGAAGCTCTCGTCCTATATTCGAAACTCCTTATGGAAGAAGAAAACAAAGTACACACAAAATGTTGAGGCATTTCTAGATAACTATGGATCTCTTGCTCTAAGAAGATACAAGTATTTAGATATCAAGAAGATGACCAACTCCTTCAAAGACAAACTGGGGCAAGGAGGCTATGGTGGTGTCTTCAAAGGGAAGCTTGTGGATGGACGTTTGGTAGCCATTAAAGTAATGAGGAACACCAAAGGTAATGGAGAAGAATTCATTAACGAAGTAGCTACCATCGGCACGACAAACCATCTTAATATAGTTAGCCTTTTGGGCTTTTGCTCTGAGGGCTCAAAGCGAGCTCTCGTCTACGAGTTCATGCCCAATGGATCCCTCGAAAAGTTCATCTTTGCAGAACGGTCTAGTGTAACACATCCTCTAGGATGGGAAAAGCTTTACCAGATTGCACTTGGTATTGCACGAGGGCTCGAGTACTTGCACCGTGGTTGTAACACTCGTATTTTGCATTTCGATATAAAACCTCATAACATTCTCTTAGACCATGACTTTTGTCCGAAGATTTCTGACTTCGGGTTGGCTAAACCTTGCCCGACAAGAGAGAGCATTGTATCAATGCTTGGAACTCGAGGGACTGTGGGCTATATTGCACCTGAAGTATACTGTAGAAACATTGGAGGAGTCTCTTACAAGTCGGATGTTTATAGCTACGGAATGATGGTGTTAGAAATAGTTGGAGGAAGAAAGAACATTGATCCTAGAGTGGAGAACACAAGCGAAATATATTTTCCACATTGGATTTATAATCGTATCGAACAACAAGGTGATATGAAATTGGGAGTATTTGAACAAGTTTTCCAGGAAGAGACAGCAATGAAGATGATATTGGTGGGTTTGTGGTGCATACAGACAGATCCTGGTATTCGCCCTTCGATGACTAGGGTGGTGGAGATGCTGGAAGGAAGCATTGAAAGTGTGCAAATGCCACCTAAGCCTTTCCTTGATCACCCTTCAGGATAA 1848 0.4334 MFQSDLFPLLLITFSILSANSLDFHTANCPTFLCGNINIAYPFWIHNKTSPEHCGYPGLGLSCSSNRYNSPVILLSNNASYYVKSIDYNSNIITVVDVDVVEQSCPRTRRNVTLDSTPVLDLKDDQKLTFFFNCSLNPSSKSSLECLSNNTRRSYVFSAKDQIPKLDWYGNCEESVVVPVMAINGLSITGFGPSLQEGFHLIWSSSDNCKVCEKNNGHCWYNQTSSESVCVCPDGRKVRTGSCIPGISPNGKKVLLGASVTVLAIIVLILVLVHRKKLSSYIRNSLWKKKTKYTQNVEAFLDNYGSLALRRYKYLDIKKMTNSFKDKLGQGGYGGVFKGKLVDGRLVAIKVMRNTKGNGEEFINEVATIGTTNHLNIVSLLGFCSEGSKRALVYEFMPNGSLEKFIFAERSSVTHPLGWEKLYQIALGIARGLEYLHRGCNTRILHFDIKPHNILLDHDFCPKISDFGLAKPCPTRESIVSMLGTRGTVGYIAPEVYCRNIGGVSYKSDVYSYGMMVLEIVGGRKNIDPRVENTSEIYFPHWIYNRIEQQGDMKLGVFEQVFQEETAMKMILVGLWCIQTDPGIRPSMTRVVEMLEGSIESVQMPPKPFLDHPSG* 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00543 615 FunFam S-receptor-like serine/threonine-protein kinase 289 396 - -
Eupl08g00543 615 PANTHER RUST RESISTANCE KINASE LR10-RELATED 288 608 IPR045874 GO:0004672
Eupl08g00543 615 Pfam Wall-associated receptor kinase C-terminal 146 235 IPR032872 -
Eupl08g00543 615 FunFam PR5-like receptor kinase 397 607 - -
Eupl08g00543 615 CDD STKc_IRAK 328 597 - -
Eupl08g00543 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 444 456 IPR008271 GO:0004672|GO:0006468
Eupl08g00543 615 ProSiteProfiles Protein kinase domain profile. 322 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl08g00543 615 SMART serkin_6 322 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl08g00543 615 ProSitePatterns Protein kinases ATP-binding region signature. 328 350 IPR017441 GO:0005524
Eupl08g00543 615 Pfam Protein kinase domain 325 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl08g00543 615 Gene3D Phosphorylase Kinase; domain 1 296 396 - -
Eupl08g00543 615 SUPERFAMILY Protein kinase-like (PK-like) 303 596 IPR011009 -
Eupl08g00543 615 Pfam Wall-associated receptor kinase galacturonan-binding 29 97 IPR025287 GO:0030247
Eupl08g00543 615 Gene3D Transferase(Phosphotransferase) domain 1 397 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00543 Eupl-Chr8 9995992 10002062 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00543 1 612 Receptor kinase-like Gene Family AT1G66910 39.690 7.54e-141 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Eupl08g00543 Pkinase 2.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00543 - - nnu:104596891 631.328