Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00532 ATGATAAGGAACCAGTTCTCTGAAATGAATGCACCAAAGGACAGTGCATCTGTTAACAAGTATTATAATCTTGCACATGCTGTGAATGAAAGGGTCATAAGGCAACCCTCAATGTTACGGACTGGAACTTTAAGAGACTATCAGCTTGTTGGTTTGCAATGGATGCTTTCTTTGTATAACAACAAATTAAATGGGATTTTGGCAGATGAGATGGGTCTTGGGAAGACTGTACAGGTAATGGCATTGATTGCTTATTTGATGGAGTTCAAAGGAAACTACGGGCCGCATCTTATTATTGTTCCAAATGCTGTTTTAGTAAACTGGAAGAGTGAGTTGCATAATTGGCTGCCATCTGTGTCATGCATTTATTATGTTGGTGGAAAAGATCAACGTTCAAAGTTGTTTTCTCAAGAGGTTTGTGCCTTGAAATTTAATGTACTTGTTACAACATATGAGTTCATCATGTATGACCGTTCAAAGCTATCAAAAGTTGATTGGAAGTATATCATAATTGATGAAGCACAACGAATGAAGGATAGGGAATCAGTTCTAGCACGCGACCTTGATAGGTATCGTTGCCAGAGACGTCTGCTTCTTACTGGGACCCCATTACAGAATGATCTGAAAGAGCTTTGGTCGCTATTAAATTTACTCCTTCCAGAAGTATTTGATAATCGCAAAGCGTTTCATGATTGGTTTTCGAAGCCCTTTCAGAGGGATGCCCCTTTGCATAATGCGGAGGATGATTGGCTCGAGACAGAGAAAAAGGTGATCATTATACACAGACTTCATCAAATTTTGGAGCCTTTTATGCTCAGGCGTCGTGTTGAAGATGTGGAAGGGTCACTGCCACGCAAGGTTTCCATTGTTTTGAGATGTAGAATGTCAGCTATGCAAGGCGCCATATATGATTGGATTAAATCAACTGGTACTCTTAGGGTTGACCCTGAGGACGAGTTGCGGAGGGTTCAAAAGAATCCAATTTATCAGGCCAAGATATACAGGACCCTCAATAATAGATGTATGGAGCTCCGTAAAGCTTGCAATCATCCTTTGCTTAATTACCCTTATTTCAATGACTACTCCAAAGAATTCATTGTCAGATCTTGTGGGAAACTTTGGATCCTAGATAGGATTCTCATAAAACTTCAGAGAACGGGACATCGAGTACTGCTCTTTAGTACCATGACGAAGCTTCTTGATCTATTGGAGGAGTACTTGCAATGGCGGCAGCTTATCTATAGACGAATTGATGGGACAACTAGCTTAGAAGACCGTGAATCAGCTATTGTGGACTTCAACGGCCCTGATTCTGATTGCTTTATTTTCTTGCTTAGTATCCGTGCTGCTGGAAGAGGTCTAAATCTTCAGTCTGCAGATACAGTTGTCATATATGATCCAGATCCAAATCCTAAAAATGAAGAACAAGCAGTGGCGAGGGCACATCGTATTGGACAGAAGAGAGAGGTTAAAGTCATATATATGGAAGCAGTTGTTGACAAAATCTCGAGCCATCAGAAAGAGGATGAATTGAGAAGTGGAGGTACGGTTGATTTAGAGGATGACCTTGCAGGTAAAGATCGATATATTGGATCAATTGAGAGCCTAATACGCAATAATATTCAACAATATAAGATTGACATGGCGGATGAAGTTATAAATGCTGGTCGTTTTGATCAGAGGACAACACATGAAGAGAGGCGTTTGACTTTAGAGACATTATTGCATGATGAGGAGAGGTATCAAGAGACTGTGCATGATGTTCCCTCGCTGCAGGAGGTGAATCGCATGATTGCTCGGAGTGAAGAAGAAGTTGAGCTGTTTGATCAAATGGATGAAGACTTAGATTGGACTGAGGAGATGACGAGGTACGACCAGGTTCCTAAGTGGCTTCGAGTCAGTTCTAGGGAAGTAAATGCTACTATTGCTAAGTTATCTAAGAAGCCAGCAAAGAACACTTTAGTTCAGAACATTGGCACGGAATCTGGTGAAGCGCACTCCGATTTATCGCCTACTAAAACCGAGAGGAAAAGGGGGAGACCAAAGGGCTCATTGAGTGGCAAAAAGTCTCCTATCTACAGGGAATTGGATGATGAAAATGGGGAATTTTCTGAAGCAAGTTCAGAAGAGAGAAATGGATATTCTTTGCATGAAGAAGAGGGAGAAATTGGGGAGTTTGAAGATGAAGAATTTAGTGGTGCTGTTGGTGCACCACCAAGTAATAAGGACCAATCAGAAGAGGAGGGCCCGGTTTGTGATGGTGGTTATGAATATCCCCAAGCATCGGAAGGCGCCAGATGCAATCATATACTTGAAGAAGCTGGTTCTGCAGGATCTTCTTCTGAGAGTCGAAGATTGGCACAGATGGTGTCTCCTTCCATATCTTCCCAGAAGTTTGGGTCTCTTTCTGCATTAGATGCTAGGCCAGGTCATCTTTCAAAAAGGCTGCCTGATGAACTAGAGGAAGGAGAAATTGCAGTGTCAGGTGACTCCCACCTGGACTTCCAACAATCTGGAAGTTGGATTCATGACCGTGATGATGGCGAAGATGAGCAGGTTTTGCAACCAAAAATAAAAAGGAAGCGTAGTATTCGCATTCGACCCAGGCATTCTTTGGAAAGGCTTGAAGAAAAGCCTAGCAGTGAAAAGCCCTTTCCCCAGCGTGGAAGTTCATCTCAGTTGGCCATTCAAGTGGGCCATGACTATGGAGTGCAATTAAAGACTGATGCTGAACACGAGACATTTGGAGAGCCTGTTGATGTCAGGCATGACCCTAGCGATTTAGTTATGAAAAATAGGCGAAATTTACCATCAAGGAAGGATGTGAATTCTTCCAAATTGCATGCTGCGCCAAAACCCACCCCATTGAATTGCTTGTCGGGGCCTACAGAGGATGCCACAAAGCATTCCAGAGAAACTTGGGATGGTAGAACTATGAACACTACTGGGCCTGCCTTCATTGGCACAAAGATGTCTGACATTGTTCAAAGAAAGTGCAAGAATGTAATCAACAAGTTTCAGAGAAGGATAGATAAGGACGGTCATCAAATTGTACCTCTGTTAATGAGTTTTTGGAAGAGGAGTGAGAACTCCAGTTACACGACTGGTATGGTTGGGACTAATCTATTGGATCTACGGAGGATCGATCAGCGTGTGGACAGATTAGAGTATAACGGGGTGCTGGACTTTGTGACGGATGTGCAGTCCATGTTGAAAAATGCTGCTCAGCATTTTGGCTTCTCATATGAGGCGAGATCCGAAGTGAGAAAAGTACAAGATCTCTTCTTCGACATAATGAAGATTGCATTCCCAGACACAGATTTCCGAGAAGCTAGGAATGCGGTTTCATTTTCTGGCCCTGGATTTACCTCTGCTCTGTCCCCAAAACAAGCTTCTGTTGGCCAAAGCAAGCGACACAAGCTGATTAACGAGGTGGAAACTGATCCGATTCATCCTCGGAAGCTATTGCCACGTGGGTCTGTCTCTGCTGATGAAGACATGAGGACTCGAGGCCACAGGTCCAAGTTTCAGAAGGATTCTGGGTTGGCAAGCAGTAGTGGACAGGAGCATGGTCAGCCAGATGAGGTACCAGTGCTTGCTCACCCAGGGGATCTGGTCATCTGCAAGAAGAGGAGGAAAGACAGAGATAAGTCGGCAGTGAAGCCAAGGACTGGTCCGGTGTCTCCTCCTAGCGTGGGTCCAAGTGTCAGGGGTCCAGGTTTGAGTCCTGGTCTAGCCCAGAGGGATGTGAAGTTGAGTCAGCAGGCTACACATCAGCATGGGTGGGCCCACCAGCCGAGTCAACAGGCTAATGGCAGTGGTGGAGGTGGTGGTGGCGGGACTTTGGGTTGGGCAAAGCCTGTGAAGAGAATGAGGACGGATACTGGTAAAAGGAGGCCAAGCCATCTATGA 3912 0.4427 MIRNQFSEMNAPKDSASVNKYYNLAHAVNERVIRQPSMLRTGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHNWLPSVSCIYYVGGKDQRSKLFSQEVCALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSKPFQRDAPLHNAEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPRKVSIVLRCRMSAMQGAIYDWIKSTGTLRVDPEDELRRVQKNPIYQAKIYRTLNNRCMELRKACNHPLLNYPYFNDYSKEFIVRSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDLLEEYLQWRQLIYRRIDGTTSLEDRESAIVDFNGPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQETVHDVPSLQEVNRMIARSEEEVELFDQMDEDLDWTEEMTRYDQVPKWLRVSSREVNATIAKLSKKPAKNTLVQNIGTESGEAHSDLSPTKTERKRGRPKGSLSGKKSPIYRELDDENGEFSEASSEERNGYSLHEEEGEIGEFEDEEFSGAVGAPPSNKDQSEEEGPVCDGGYEYPQASEGARCNHILEEAGSAGSSSESRRLAQMVSPSISSQKFGSLSALDARPGHLSKRLPDELEEGEIAVSGDSHLDFQQSGSWIHDRDDGEDEQVLQPKIKRKRSIRIRPRHSLERLEEKPSSEKPFPQRGSSSQLAIQVGHDYGVQLKTDAEHETFGEPVDVRHDPSDLVMKNRRNLPSRKDVNSSKLHAAPKPTPLNCLSGPTEDATKHSRETWDGRTMNTTGPAFIGTKMSDIVQRKCKNVINKFQRRIDKDGHQIVPLLMSFWKRSENSSYTTGMVGTNLLDLRRIDQRVDRLEYNGVLDFVTDVQSMLKNAAQHFGFSYEARSEVRKVQDLFFDIMKIAFPDTDFREARNAVSFSGPGFTSALSPKQASVGQSKRHKLINEVETDPIHPRKLLPRGSVSADEDMRTRGHRSKFQKDSGLASSSGQEHGQPDEVPVLAHPGDLVICKKRRKDRDKSAVKPRTGPVSPPSVGPSVRGPGLSPGLAQRDVKLSQQATHQHGWAHQPSQQANGSGGGGGGGTLGWAKPVKRMRTDTGKRRPSHL* 1304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00532 1303 SMART ultradead3 40 229 IPR014001 -
Eupl08g00532 1303 FunFam ATP-dependent helicase BRM 35 283 - -
Eupl08g00532 1303 MobiDBLite consensus disorder prediction 869 883 - -
Eupl08g00532 1303 MobiDBLite consensus disorder prediction 1248 1275 - -
Eupl08g00532 1303 SUPERFAMILY Bromodomain 1043 1106 IPR036427 GO:0005515
Eupl08g00532 1303 MobiDBLite consensus disorder prediction 811 828 - -
Eupl08g00532 1303 MobiDBLite consensus disorder prediction 1119 1137 - -
Eupl08g00532 1303 Pfam SNF2-related domain 47 351 IPR000330 GO:0005524|GO:0140658
Eupl08g00532 1303 MobiDBLite consensus disorder prediction 839 858 - -
Eupl08g00532 1303 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 278 615 IPR027417 -
Eupl08g00532 1303 PANTHER SNF2/RAD54 HELICASE FAMILY 20 765 - -
Eupl08g00532 1303 Gene3D - 990 1144 IPR036427 GO:0005515
Eupl08g00532 1303 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 56 221 IPR014001 -
Eupl08g00532 1303 FunFam ATP-dependent helicase BRM 284 494 - -
Eupl08g00532 1303 FunFam Brahma1 990 1114 - -
Eupl08g00532 1303 MobiDBLite consensus disorder prediction 1139 1177 - -
Eupl08g00532 1303 Gene3D - 284 494 IPR027417 -
Eupl08g00532 1303 Gene3D - 35 283 IPR038718 -
Eupl08g00532 1303 MobiDBLite consensus disorder prediction 1205 1221 - -
Eupl08g00532 1303 MobiDBLite consensus disorder prediction 933 982 - -
Eupl08g00532 1303 SMART bromo_6 992 1104 IPR001487 GO:0005515
Eupl08g00532 1303 MobiDBLite consensus disorder prediction 774 802 - -
Eupl08g00532 1303 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 274 IPR027417 -
Eupl08g00532 1303 MobiDBLite consensus disorder prediction 653 893 - -
Eupl08g00532 1303 CDD SF2_C_SNF 362 495 - -
Eupl08g00532 1303 MobiDBLite consensus disorder prediction 1119 1303 - -
Eupl08g00532 1303 Pfam Helicase conserved C-terminal domain 374 485 IPR001650 -
Eupl08g00532 1303 Coils Coil 591 611 - -
Eupl08g00532 1303 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 375 552 IPR001650 -
Eupl08g00532 1303 MobiDBLite consensus disorder prediction 653 667 - -
Eupl08g00532 1303 SMART helicmild6 401 485 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00532 Eupl-Chr8 9702405 9718185 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00532 65 510 RAD5 or RAD16-like Gene Family AT1G02670 26.112 1.38e-30 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Eupl08g00532 SNF2_N 5.6e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00532 K11647 - ming:122085719 2070.43