Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00530 ATGGCAGGATGGTCGATTTTAACAGATGGGTCTGCTTTGGATTGCATCGAAATCCTTCGAAATCTTCAGAGCAATGGGTTCTGCTTGGATCTTGATGCTTCTTTGAAAGGGGGTCTCGATGCTAACAAAGATAAACTTCGATCCTTGTTCGATCAGATTCTCTCTGTTTTTCTCAAAGAGATCTCTCTCAGTGAACATATTCGGCCTGTACCTGCAATGCTTGGAGATGGGCGATGTGTGGATTTGTTCAAACTCTTCTGTGTCGTGAGGGAAAAGGGCGGATATGATTCTGTGTCGAAGAATGGGTTATGGGCATCGGTGGCGGAAGAGTCTGGTTTGGGTTCGGGAGTCGTGTCCTCTGTAAAATTGATTTACATTAAGTATTTGGATACATTGGATCGGTGGGTACGGAGAATTTTCAGACATAAGGGTAGAGGGGGAGGTTTAGCTGACTGTGGTAGGAATTTGGGTTTGTTGTCTGTCGGGTTAGAGACAGAGATTGAAGGTTTGTTATCTGATATATCAGCTCAAAAGAAGAAAGTCGAGGAGTCCCCTCTGTTGGATTCAGAGAATGAGTTTCGAGTGTCTACCACAGGACACAGGCATAACATACATGAGATTAGGAGCACGATGGAGTCAAGCTGTAGTAGGAAATGTGTTGATGATGACGAAGAAGTTATGATCTTAGACCCAATCGCTGTTAATGAAGATATTTATTCTCGTAAGAGAAAGCGAGAGACTCTGTCAGGAATGCTGAATTGGGTGATCGAGATTGCTAAGAATCCCAGTGGTCCTGCAATTGGAAAGTTACTGGAAGTGTCTAAACAGAAGGCAAATGGAGGTGAGGAGTTCCGGGGCCAGGCTCTGAAAGCTCGAGAGGCACTGCTTCAAACTAGGCACATTTATTTGAGTGCAGAAAGGTCTCTCCTGCAGGAGAAAAAGCAGAGGATGCATCCTTCCATGTATGAGGATCAAAGTGGTGCAGATCACCAGTTTACAGAAAGATTAAGATGCAGCCAGAGGCTCTTTTCTCGGAAAAACTCTCATTCTTGGTCTTGTTCTGAGTCATCCGAAACCACTCAAATTGACTTGGACATGAGTCTAACACCTTGCACTGCTGGGACGGAATATTACCCTTACAAACGGTCGCTTGGGATTGCTGATTCTTTAACTGCAGATAATGCAGTTAATCTTTTCAGTGATGATCAGTTACGAAAGTGGGTCCCTGTGGGCCCACTCTTTCAAGCTGAAGTACCAGAATGGACCGGCGTGGCTTCAGAGAGTGACTCCAAATGGTTGGGTACACAGCATTGGACGCTGATAACAAGAGAGCAGAATTCCCTAATTGAAAGGGATCCTATTGGAAAGGGAAGACAAGATTCGTGTGGTTGCCGACTTCGGGGTTCCGTCGAATGTGTTAGATTTCATATTGCTGAAAAAAGGATGAGACTGAAGCTTGAATTGGGCTCCGCTTTCTACAACTGGAGATTCTATTGTATGGGTGAAGAAGTTTCACTTTCATGGACAGAGGAAGAAGAAAAGAGGTTCAAGGCTATAGTGAGGTTAAACCCTCCATCTTTAAACAAGTGTTTCTGGGACCAGGCATCCAAATGCTTTCCTACCAAAAAATGGCGATGCTTAGTGAGCTATTACTTCAATGTGTTTCTTCTCCGCCGCAGAAGTTACCAGAACCGGGTGACTCCAAACAGCATCGACAGTGATGATGATGAATCGGAGTTTGGATCTGTAAGTAACGGTTTCGGGCATGAAGCAGTTAAGGTTCCAGGTTCCAAGTCCATATTCTGTGCTCAGAATAAGCAGTGCATTGATTTGGATTAG 1839 0.4454 MAGWSILTDGSALDCIEILRNLQSNGFCLDLDASLKGGLDANKDKLRSLFDQILSVFLKEISLSEHIRPVPAMLGDGRCVDLFKLFCVVREKGGYDSVSKNGLWASVAEESGLGSGVVSSVKLIYIKYLDTLDRWVRRIFRHKGRGGGLADCGRNLGLLSVGLETEIEGLLSDISAQKKKVEESPLLDSENEFRVSTTGHRHNIHEIRSTMESSCSRKCVDDDEEVMILDPIAVNEDIYSRKRKRETLSGMLNWVIEIAKNPSGPAIGKLLEVSKQKANGGEEFRGQALKAREALLQTRHIYLSAERSLLQEKKQRMHPSMYEDQSGADHQFTERLRCSQRLFSRKNSHSWSCSESSETTQIDLDMSLTPCTAGTEYYPYKRSLGIADSLTADNAVNLFSDDQLRKWVPVGPLFQAEVPEWTGVASESDSKWLGTQHWTLITREQNSLIERDPIGKGRQDSCGCRLRGSVECVRFHIAEKRMRLKLELGSAFYNWRFYCMGEEVSLSWTEEEEKRFKAIVRLNPPSLNKCFWDQASKCFPTKKWRCLVSYYFNVFLLRRRSYQNRVTPNSIDSDDDESEFGSVSNGFGHEAVKVPGSKSIFCAQNKQCIDLD* 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00530 612 Gene3D - 36 143 IPR036431 GO:0003677
Eupl08g00530 612 SMART ELM2_2 408 459 IPR000949 -
Eupl08g00530 612 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 41 607 - -
Eupl08g00530 612 SUPERFAMILY ARID-like 48 138 IPR036431 GO:0003677
Eupl08g00530 612 Pfam ARID/BRIGHT DNA binding domain 67 131 IPR001606 GO:0003677
Eupl08g00530 612 ProSiteProfiles ARID domain profile. 44 137 IPR001606 GO:0003677
Eupl08g00530 612 SMART ARID_2 41 133 - -
Eupl08g00530 612 CDD ARID 47 129 - -
Eupl08g00530 612 SMART bright_3 45 138 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00530 Eupl-Chr8 9646796 9665226 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Eupl08g00530 ARID 1.4e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00530 - - nnu:104596016 761.911