Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00523 ATGGGAGGTTGCTGTTGTGCTTCCAGAAGAGCTCAACGGAGCGGGACACCAGTATACTATTACTGCCCACAAGCTTTAGAAGAGCGTGAGCCGTTATCATCCCCCCATGGTGCGGCCTCTACACTTTCTACAGGACTCCTAGTAGATACAAATCTGGACACATCAACCCTTGACACCTATCAAGCACCTCCTGCGCCAATGCCATATGATGTGGATTTGGGACGTCCTCAAACGTCTCCAGGCACGCGGGGAAGTAGTGGTAACAAGATTGATGCAGCAGTGCAAACAATGGAATCTGAGTCTGCTGGAGAAACAATAAGTGGTAGTGGATTTGAAACTTTGGCTGCAAGTGAAGGTCTGAAGGAATCAGACTGCAAAAGTCAAGCAGATTCTCTGCTTGCCTCTCCAAAGGAATCCAGAGTTGAACCCTCAAAGTCAGATGAATCTATTATTTCAGCAGCAGAGGAGGAAGATGTTTGCCCCACCTGCTTTGAAGAGTATGATGAGGAGAATCCAAGAATTGTCACAAAATGCGAACATCATTTTCACCTTTCGTGTATTCTTGAATGGATGGAAAGAAGTGATACCTGCCCCTTGTGCGATAAGGAAATGGTATTCAACCTTACCTCTAATTGA 636 0.4607 MGGCCCASRRAQRSGTPVYYYCPQALEEREPLSSPHGAASTLSTGLLVDTNLDTSTLDTYQAPPAPMPYDVDLGRPQTSPGTRGSSGNKIDAAVQTMESESAGETISGSGFETLAASEGLKESDCKSQADSLLASPKESRVEPSKSDESIISAAEEEDVCPTCFEEYDEENPRIVTKCEHHFHLSCILEWMERSDTCPLCDKEMVFNLTSN* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00523 211 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 39 207 - -
Eupl08g00523 211 MobiDBLite consensus disorder prediction 60 89 - -
Eupl08g00523 211 FunFam Putative E3 ubiquitin-protein ligase RHB1A 136 205 - -
Eupl08g00523 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 207 IPR013083 -
Eupl08g00523 211 CDD RING-H2_AIRP1-like 156 204 - -
Eupl08g00523 211 MobiDBLite consensus disorder prediction 119 149 - -
Eupl08g00523 211 ProSiteProfiles Zinc finger RING-type profile. 160 201 IPR001841 -
Eupl08g00523 211 Pfam RING-H2 zinc finger domain 148 200 IPR024766 GO:0008270
Eupl08g00523 211 SMART ring_2 160 200 IPR001841 -
Eupl08g00523 211 SUPERFAMILY RING/U-box 155 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00523 Eupl-Chr8 9319640 9329973 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00523 1 207 C3H Transcription Factor Family AT4G00335 53.140 3.07e-70 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00523 - - tss:122666157 318.546