Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00509 ATGGGCTTTCCAGTGGGATACACCGAGCTTTTCTTTCCAAAGCTTCTTGTACACACACTTTCCCTTCTGGGTTTCATCAGAAAAGTCATCTCCTGCCTTTTCCGCATACTGGGTCTCGGAGATTTTCTCGAATCCGACATTACCTGGCCGGACCGTCCGACGCACCTCCCCGAATTCCAGTCCGTATCTGCCGTTCTGATCCGAGAGATTCTACCTGTGGTGAAGTTCGAGGACTTGGTTTTCGGCGACGGGGACACCCCCGACAGCTGCGCTGTTTGTCTCTATGAGTTCGAGGGGCGAGAAGAAATAAGACGGTTGACGAACTGCCGACACATTTTCCACCGGAGTTGTTTGGATCGTTGGATGGATCATGATCAGAAAACTTGTCCTCTTTGTAGAACTCCATTTATCCCGGATGAGATGCAGGATACGTTCAACGAAAGGTTATGGGCTGCTTCTGGGATTCCCGATTTCTACGGCGAATACTCGTTGGTTTCGGACTTCTAG 507 0.503 MGFPVGYTELFFPKLLVHTLSLLGFIRKVISCLFRILGLGDFLESDITWPDRPTHLPEFQSVSAVLIREILPVVKFEDLVFGDGDTPDSCAVCLYEFEGREEIRRLTNCRHIFHRSCLDRWMDHDQKTCPLCRTPFIPDEMQDTFNERLWAASGIPDFYGEYSLVSDF* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00509 168 SMART ring_2 90 132 IPR001841 -
Eupl08g00509 168 Pfam Ring finger domain 88 133 IPR001841 -
Eupl08g00509 168 ProSiteProfiles Zinc finger RING-type profile. 90 133 IPR001841 -
Eupl08g00509 168 PANTHER RING ZINC FINGER PROTEIN-RELATED 20 153 - -
Eupl08g00509 168 SUPERFAMILY RING/U-box 72 139 - -
Eupl08g00509 168 FunFam RING-H2 finger protein ATL73 67 140 - -
Eupl08g00509 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 140 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00509 Eupl-Chr8 9123074 9125042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00509 1 154 C3H Transcription Factor Family AT1G63840 57.500 2.99e-58 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00509 K16281 - nnu:104610658 314.309