Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00471 ATGGGTCATCATTCTTGCTGCAACCAACAAAAGGTTAAGAGAGGCCTTTGGTCCCCAGAGGAAGATGAAAAGCTCATTCGCTACATAACCACCCATGGCTATGGTTGTTGGAGTGAAGTCCCTGAGAAAGCAGGGCTTCAAAGATGTGGTAAAAGTTGCCGGTTGAGATGGATCAACTATTTGAGGCCTGACATCAGACGAGGGAGGTTTACCCCAGAGGAGGAGAAGTTGATTATCAGCCTTCATGGCGTTGTAGGAAACAGGTGGGCTCACATAGCAAGTCACTTGCCAGGGAGAACAGACAACGAGATAAAGAATTATTGGAATTCATGGATTAAAAAGAAGATACATAAGCATTCTACGCCTCAAGCGACGATCCCGCCCAATGTAGAGCTTGTTCGATCCGGTTATGGCTCAAATCAGCTAGATGTAGTGATGAATCAAGACTTTGCAGCAAAGCCACCAGTTCAAGGAACCATGTTTTCTTCTACTTCCCCCCTTTTCATGTTTGACACCGGTTTAGTCGATGGGATTGGTAGTAGCACTAATGCACGAGTGGAGAGTTTTAATGAAGCTAGGGGCCTGAATTCAGACCCTTGGCTTCTAAACCACCATCAAGTTAACACCCTTCCTCCTCCTCCTCCTCCTCCAGTGTTCGCAGGCGGCATGGATTCAAATTATTTGCCACCATTGTTGGAGCACATGGAAAACATGGTACCCATGGAGGTGCAATCATGTAGTGTTAATTATGATGGAGAAATGGCCATGGAGTGCTTACAGAGACAGGATTTGAGTGAATGGGTTGAGTCTCAACAATGCCCAAGCTTTCTATTTTGGGAGCATGTTGAAGCAGAGCTGCGTGGTGAAGGAGTTGCACCTGCTTCATCCAAAATGGGAACCATGTTATCTTCTTACCCTTCATCTTTATAA 930 0.457 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIHKHSTPQATIPPNVELVRSGYGSNQLDVVMNQDFAAKPPVQGTMFSSTSPLFMFDTGLVDGIGSSTNARVESFNEARGLNSDPWLLNHHQVNTLPPPPPPPVFAGGMDSNYLPPLLEHMENMVPMEVQSCSVNYDGEMAMECLQRQDLSEWVESQQCPSFLFWEHVEAELRGEGVAPASSKMGTMLSSYPSSL* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00471 309 CDD SANT 69 112 IPR001005 -
Eupl08g00471 309 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Eupl08g00471 309 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Eupl08g00471 309 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Eupl08g00471 309 PANTHER MYB DOMAIN PROTEIN 55 1 149 - -
Eupl08g00471 309 FunFam Transcription factor MYB26 68 132 - -
Eupl08g00471 309 CDD SANT 17 61 IPR001005 -
Eupl08g00471 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Eupl08g00471 309 SMART sant 66 114 IPR001005 -
Eupl08g00471 309 SMART sant 13 63 IPR001005 -
Eupl08g00471 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Eupl08g00471 309 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Eupl08g00471 309 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Eupl08g00471 309 Gene3D - 68 131 - -
Eupl08g00471 309 Gene3D - 6 66 - -
Eupl08g00471 309 FunFam MYB transcription factor 6 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00471 Eupl-Chr8 8557260 8558988 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00471 1 292 MYB Transcription Factor Family AT1G63910 50.708 5.51e-101 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl08g00471 Myb_DNA-binding 4.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00471 K09422 K02947 nnu:104600198 478.789