Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00439 ATGTCCAACAGCGCCTCTGCTGCTACTGCCACCGCCAGCTCTGCCGTCAGCGGTGGCACTGGGGGTGGTGGAAACTCCTCTGGCTACTTCCTCCAGAACCTAACCAACCTCGGCCTCGGCTACGCCATCGCCATCCCTCTTGGTTCCCTCATCCTTCTCTCCACCATCTTCCTCGCCTCCTACGTCTGCTTCCGCGCCTCCCGCTCTCCAAACTCTAGCCCTAACCCCTCGAACCCCAACGGTATCATCCTCCCTCGCATCATCTTTGTTGCAGAAGATGATGATGAGAACAATAGAAATCAGGAGAACGTCGTTGCCGGACTCGATCAAACGGTCATTAATTCGTACCCAAAGTTCCCGTTCTCGAAGGATCGGGTGAACGGTGGTGACTCGGTGTGTTCGATCTGTCTATGTGATTATAAGGACGATGAGATGCTGAGGATGATGCCTGACTGTCATCATTTCTTTCATCTTTGCTGCCTTGATGCTTGGTTGAGACTCCATGCTTCATGCCCTGTCTGTCGGAATTCTCCTTTGCCGACTCCATTGTCGACACCGCTTTCAGAGATTGTGCCTCTCGCACATTATCAAGGGGACCGGAGATTGTGA 609 0.5337 MSNSASAATATASSAVSGGTGGGGNSSGYFLQNLTNLGLGYAIAIPLGSLILLSTIFLASYVCFRASRSPNSSPNPSNPNGIILPRIIFVAEDDDENNRNQENVVAGLDQTVINSYPKFPFSKDRVNGGDSVCSICLCDYKDDEMLRMMPDCHHFFHLCCLDAWLRLHASCPVCRNSPLPTPLSTPLSEIVPLAHYQGDRRL* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00439 202 SMART ring_2 133 174 IPR001841 -
Eupl08g00439 202 PANTHER RING-H2 FINGER PROTEIN ATL67 28 201 IPR044289 GO:0016567|GO:0016740
Eupl08g00439 202 Pfam Ring finger domain 133 175 IPR001841 -
Eupl08g00439 202 SUPERFAMILY RING/U-box 113 180 - -
Eupl08g00439 202 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 179 IPR013083 -
Eupl08g00439 202 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00439 Eupl-Chr8 7794031 7794819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00439 27 195 C3H Transcription Factor Family AT5G06490 40.761 5.13e-41 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00439 - - nnu:104600252 263.462