Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00396 ATGGACCAAACATCTTGTGCAAAGAGGAAGATTCAGAGATACTACCGCACTTCTGCTAAAGAGTTGATGCGGATTAATGGCACGACTAAGTCTTTCGTTGCCAACTATCTAGCTGAATCCATAGCAGGAGCCATGACAATCAGAGCTTTCGAGGAAGAAGACCGATTCTTTGCTAAGAATATGGACCTCATCAACAAAAATGGCAGTCCATTCTTCCACACTTTTGCAGCAAATGAATGGTTGATCCAACGTTTGGAAACACTCAGTGCCATTGTCTTTTCATCCTCAGCATTTGCCATGGTTTTGCTTCCACCAGGAACTTTTAGCTCAGGATTTATCGGAATGGCATTGTCATTTGGTCTTTCCTTAAACATGTTCCTTGTCTACTCTATTCAATACCACTGCACGCTATCAAATGACATCATTTCTGTAGAAAGGCTATATCAGTACATGTATACACCCAGTGAAGCCCCAGAAATCATTGAAGGTAACCGGCCTGTACCCAGTTGGCCTTCCCATGGTAAAGTGGAGATTCACAATTTGAAGGTAAGGTATAGGCCCAATACTCCACTCATTCTTCAAGGAATCAGTTGCACATTTGAAGGAGGGCACAAGATTGGGATTGTTGGACGGACTGGCAGTGGAAAGACAACTCTGATCAGTGCTTTGTTTCGTCTGGTAGAGCCGGTAGGGGGAAAAATTTTCATAGATGGCCTTGACATCTCCACAATCGGGCTTCACGATCTGAGGTCACGTTTCGCGATTATACCTCAAGATCCTACCCTTTTTCGTGGGACCGTGAGATACAATTTGGATCCATTAGCACAACGTACTGATCAAGAAATATGGGAGATTCTTGGGAAATGTCAGCTTCTAGAGACTGTTAAACAGAAAGAAGAGGGTCTGGACTCTCTAGTAGCAGAAGATGGGTCGAATTGGAGCATGGGACAGCGACAATTATTTTGTCTGGGGCGTGCTTTGTTAAGGGGAAGTCGGATATTGGTGCTTGATGAAGCCACTGCATCAATCGACAATACGACCGATTCAATTATCCAGAAAACCGCGAGGACAGAATTCGCAGACTGCACTGTGATTACAGTGGCCCACAGAATACCGACCGTGATGGACTGCACAATGGTGCTTTCTCTCAATGATGGAAAACTAGTGGAGTATGATGAACCAACGAAGCTGATGAAGAAGGAGGGCTCACTGTTCGGGAAGCTTGTCAGAGAATACTGGTCTCACACAACAAATGCCAGCATGCTCTCCTAA 1272 0.4473 MDQTSCAKRKIQRYYRTSAKELMRINGTTKSFVANYLAESIAGAMTIRAFEEEDRFFAKNMDLINKNGSPFFHTFAANEWLIQRLETLSAIVFSSSAFAMVLLPPGTFSSGFIGMALSFGLSLNMFLVYSIQYHCTLSNDIISVERLYQYMYTPSEAPEIIEGNRPVPSWPSHGKVEIHNLKVRYRPNTPLILQGISCTFEGGHKIGIVGRTGSGKTTLISALFRLVEPVGGKIFIDGLDISTIGLHDLRSRFAIIPQDPTLFRGTVRYNLDPLAQRTDQEIWEILGKCQLLETVKQKEEGLDSLVAEDGSNWSMGQRQLFCLGRALLRGSRILVLDEATASIDNTTDSIIQKTARTEFADCTVITVAHRIPTVMDCTMVLSLNDGKLVEYDEPTKLMKKEGSLFGKLVREYWSHTTNASMLS* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00396 423 CDD ABCC_MRP_domain2 174 394 - -
Eupl08g00396 423 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 10 413 - -
Eupl08g00396 423 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 176 410 IPR003439 GO:0005524
Eupl08g00396 423 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 403 IPR027417 -
Eupl08g00396 423 SUPERFAMILY ABC transporter transmembrane region 11 156 IPR036640 GO:0005524|GO:0016020
Eupl08g00396 423 SMART AAA_5 202 385 IPR003593 GO:0016887
Eupl08g00396 423 Pfam ABC transporter 193 341 IPR003439 GO:0005524
Eupl08g00396 423 Gene3D - 161 410 IPR027417 -
Eupl08g00396 423 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 11 103 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Eupl08g00396 423 Gene3D ABC transporter type 1, transmembrane domain 10 157 IPR036640 GO:0005524|GO:0016020
Eupl08g00396 423 FunFam ABC transporter C family member 3 159 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00396 Eupl-Chr8 6838575 6852656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00396 166 423 Calmodulin-binding Proteins AT2G36910 30.418 1.13e-32 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00396 K05666 - aew:130791228 681.019