Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00395 ATGGCGTGGAGAGAGATAAGGAAAAATGGTCTCCATGCCCTTCTTAGAAGGGCTTTGTTTTCAACCACTCTAGGAGATGGAATGCAATTAATCTCTGCTTCAGTCAGGAGCATACCAGAATTCAATAATCCAGCATTCCAAGGTGTCGAAAATGACATGGTTTCAACCAACCGTCACTTTAATCGGTCTTTTCATGCAAGCCAGGAGCTATTGGCAAGGAGAAGAAATAATGAACCGTTTGGTTTAAAAGCTCCCAAGAAAGAGAAGTTTGTGAAAAAGGAAAACAGGACCCAACCGCCTGTTGAAGCTCCATATGTACCTCCTAAACTAAAGAGAAATGCAAAATCGATGCCCGATAGAACAATTGATATTTTTGAAGGCATGACTATTTCCGAGCTCGCTAAGCGTACTGGTGAATCAATATCTTCTCTGGAAAATATCCTTGTAAATGTTGGGGAAAAGTTTGAGTCGGAGTTCGACCCTGTCAGCATTGACATTGCAGAGCTGGTTGCGATGGAAGTTGGAGTCAATGTTAGAAGGCTGCACTCCAATGAAGGTGCAGAACTCCAACCACGATCACCAGTTATAACAGTCATGGGTCATGTTGATCATGGTAAAACATCTCTTTTGGATGCCCTGCGTCAAACGTCAGTGGCAGCCAAGGAAGCCGGAGGCATAACCCAGCATCTTGGTGCATTTGTCGTGCACATGCCATCGGGAGCATCAATCACATTCCTTGATACCCCAGGTCATGCCGCATTTAGTGCGATGCGGGCAAGAGGTGCTGCAGTCACAGATATTGTGGTTCTTGTTGTAGCGGCTGATGATGGTGTGATGCCCCAAACTCTTGAAGCCATTTCCCATGCAAAAGCGGCGAACGTACCAATAGTGGTTGCGATCAACAAATGTGATAAACCAGCTGCGGACCCTGAAAGGGTGAGAATCCAGCTTGGTTCTGAGGGCTTGCCATTAGAGGAGATGGGTGGAGATGTTCAAGTTGTTGAAGTCTCTGCAATGAGTAAGATTGGATTGGATAAGTTGGAGGAGGCTTTGCTCCTCCAGGCTGAGTTGATGGATCTGAAAGCACGTGTGGATGGGCCTGCTCAAGCTTATGTAGTGGAGGCGAGGCTTGACCGAGGGCGAGGCCCTTTGGCTACTGCAATAGTGAAGGCAGGAACTTTGATCTGTGGGAAACATGTGGTTGTGGGTGCTGAGTGGGGGAGGATAAGAGCTATTAGGGATATGATGGGAAAGGTGACGGAGATGGCACAACCTGCAATGCCTGTTGTGATTGAAGGGCTTAGGGGGCTTCCCATGGCTGGTGATGATATTATTGTTGTGGATTCAGAGGATCGAGCACGGATGCTTAGTGCAGGCAGGAAAAAGAAATTTGGGAAAGATAGGCTTAGGAAAATTGATGAAGGGAGGATTGAAATTCCTGATGCATCAGAAGATGTGCCTGAGAGGGTCGAATTGCCGATGATAGTTAAAGCCGATGTACAGGGCACCGTCCAAGCAGTCACAGATGCATTGAAGAGTCTAAACAGTCCTCAGGTTTTTGTGAATATAGTCCATGTTGGAGTTGGCCCTATTTCTCAGTCTGATGTGGACTTGGCACAAGCTTGTGGTGCATGCATAGTTGGGTTCAATATACGCAGTCCACCAATTTCTGTTACTCAGGCAGCAAATCGAGCCAATATAAAGATAAAGCTCCACCAGGTAATCTACCACCTTTTGGAGGACCTGGGCAATCTGATTGTAGACAAGGCCCCGGGGACTTTTGAGACTCAGGTCGCTGGGGAGGCCCAGGTGTTGAACATCTTTGAGCTTAAGGGGAGGAGCAAATCCAAGGGAGAGGATGTGAAGATCGCAGGCTGCCGGGTAATTGATGGTCGTGTCACTAAATCGTCGATCCTGAGACTTTTGAGGAGTGGGGAGGTCGTCTTTGAGGGATCCTGTTTGTCGTTGAAGAAGGAGAAGCAGGACGTGGAAACTGTTGGGAAGGGAAATGAGTGTGGTCTTGTGATACGTGATTATGAGGATTTCCAGATTGGTGACATCATACAGTGCTTGGAGCAAGTGAACAGGAAGCCCAAGTTTGTGTCTTCAGAGAGTGGGGCCGTACGAATCGAATGCTGA 2139 0.4741 MAWREIRKNGLHALLRRALFSTTLGDGMQLISASVRSIPEFNNPAFQGVENDMVSTNRHFNRSFHASQELLARRRNNEPFGLKAPKKEKFVKKENRTQPPVEAPYVPPKLKRNAKSMPDRTIDIFEGMTISELAKRTGESISSLENILVNVGEKFESEFDPVSIDIAELVAMEVGVNVRRLHSNEGAELQPRSPVITVMGHVDHGKTSLLDALRQTSVAAKEAGGITQHLGAFVVHMPSGASITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAISHAKAANVPIVVAINKCDKPAADPERVRIQLGSEGLPLEEMGGDVQVVEVSAMSKIGLDKLEEALLLQAELMDLKARVDGPAQAYVVEARLDRGRGPLATAIVKAGTLICGKHVVVGAEWGRIRAIRDMMGKVTEMAQPAMPVVIEGLRGLPMAGDDIIVVDSEDRARMLSAGRKKKFGKDRLRKIDEGRIEIPDASEDVPERVELPMIVKADVQGTVQAVTDALKSLNSPQVFVNIVHVGVGPISQSDVDLAQACGACIVGFNIRSPPISVTQAANRANIKIKLHQVIYHLLEDLGNLIVDKAPGTFETQVAGEAQVLNIFELKGRSKSKGEDVKIAGCRVIDGRVTKSSILRLLRSGEVVFEGSCLSLKKEKQDVETVGKGNECGLVIRDYEDFQIGDIIQCLEQVNRKPKFVSSESGAVRIEC* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00395 712 Pfam Elongation factor Tu GTP binding domain 195 352 IPR000795 GO:0003924|GO:0005525
Eupl08g00395 712 FunFam Translation initiation factor IF-2 595 699 - -
Eupl08g00395 712 NCBIfam translation initiation factor IF-2 119 697 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Eupl08g00395 712 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 97 704 IPR015760 -
Eupl08g00395 712 CDD IF2_eIF5B 194 358 - -
Eupl08g00395 712 Gene3D - 188 363 IPR027417 -
Eupl08g00395 712 SUPERFAMILY Translation proteins 595 696 IPR009000 -
Eupl08g00395 712 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 481 600 IPR036925 -
Eupl08g00395 712 FunFam Translation initiation factor IF-2 487 593 - -
Eupl08g00395 712 Gene3D Translation factors 364 476 - -
Eupl08g00395 712 CDD mtIF2_IVc 600 690 - -
Eupl08g00395 712 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 191 361 IPR000795 GO:0003924|GO:0005525
Eupl08g00395 712 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 360 IPR027417 -
Eupl08g00395 712 MobiDBLite consensus disorder prediction 93 113 - -
Eupl08g00395 712 SUPERFAMILY Translation proteins 365 448 IPR009000 -
Eupl08g00395 712 Gene3D - 487 592 IPR036925 -
Eupl08g00395 712 Hamap Translation initiation factor IF-2 [infB]. 5 698 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Eupl08g00395 712 Gene3D Translation factors 594 698 - -
Eupl08g00395 712 NCBIfam small GTP-binding protein domain 194 312 IPR005225 GO:0005525
Eupl08g00395 712 FunFam Translation initiation factor IF-2 188 363 - -
Eupl08g00395 712 CDD IF2_mtIF2_II 367 462 IPR044145 -
Eupl08g00395 712 Pfam Translation-initiation factor 2 479 582 IPR023115 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00395 Eupl-Chr8 6823098 6829928 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00395 192 580 Eukaryotic Initiation Factors Gene Family AT1G76810 26.509 4.04e-27 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00395 K02519 - nnu:104602838 1137.87