Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00381 ATGGATCCAAGTTTTTTTTCTCCGATCAAATACACTGAGCACCGAAACGTTACAAAGAAGCTCACTAAGCCTCGTGGAAGAAATCAAGCAGAGATGAGCTCTGTAGGACCGAAAGTTGTACGGATTTCCGTTACTGATGCCGACGCGACTGATTCGTCTAGCGATGAAGAAGATATGCTTTTCAGTCGTCACCGTGTGAAAAAGTATATTAACGAGATTACTGTTGAAGCTTGTTCGAGAGATAACGTTAACGATAACGGTAACGGTGCTTGGAGGAGTAGATCCGTGAGGAACAATAAGAAGAAATCGAACGGAGAGGTGGAGACTGCGGCAGGTCGGCGGTCGTTGAAGCTACAGAACTCGAATGGTAAGAAGTTTCGAGGTGTACGGCAACGGCCTTGGGGGAAATGGGCGGCTGAGATTCGAGATCCATCTCGGCGTGTACGGCTTTGGCTTGGTACTTACGACACTGCTGAGGAGGCGGCGAAGGTGTATGACAACGCGGCGATTCAGTTACGAGGCCCTGACGCTATGACGAACTTTGCTACTACTCCTCCTCCGGAGAAGCCTAAGCCGGAAATCAATCTGACGACACTTTCGGGTTACGACTCCACTGATGAGTCTCATAACCTTTCCTCTCCAACCTCCGTTCTCCGGTTTCAGTCTCTTTCAAGTCAAGAATCCGAACCCCAAAATCGGTTACAACCGGTTAAGAAGTCACAGAATTCCAAGACGAGACAAGTTGTTTACCGGTTAATTTCGACTTCCAAACTCCCGTGCCGGAGTTTTTCGGCGAGGCAAGCTTACCGGATAATTTCATCAGTGAAGATTTTGGAGATATTTTTCTCTCTTCAAGTCAGGATTTCGGGTCGACGGCGTGGCAAGAGGACGATTATTTTCAAGAAATCGGCGATTTGTTTACCTCAGACCCTCTAG 936 0.4786 MDPSFFSPIKYTEHRNVTKKLTKPRGRNQAEMSSVGPKVVRISVTDADATDSSSDEEDMLFSRHRVKKYINEITVEACSRDNVNDNGNGAWRSRSVRNNKKKSNGEVETAAGRRSLKLQNSNGKKFRGVRQRPWGKWAAEIRDPSRRVRLWLGTYDTAEEAAKVYDNAAIQLRGPDAMTNFATTPPPEKPKPEINLTTLSGYDSTDESHNLSSPTSVLRFQSLSSQESEPQNRLQPVKKSQNSKTRQVVYRLISTSKLPCRSFSARQAYRIISSVKILEIFFSLQVRISGRRRGKRTIIFKKSAICLPQTL* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00381 311 MobiDBLite consensus disorder prediction 86 115 - -
Eupl08g00381 311 FunFam Ethylene-responsive transcription factor 2 124 183 - -
Eupl08g00381 311 Gene3D AP2/ERF domain 124 183 IPR036955 GO:0003700|GO:0006355
Eupl08g00381 311 ProSiteProfiles AP2/ERF domain profile. 125 182 IPR001471 GO:0003700|GO:0006355
Eupl08g00381 311 CDD AP2 124 182 IPR001471 GO:0003700|GO:0006355
Eupl08g00381 311 MobiDBLite consensus disorder prediction 197 242 - -
Eupl08g00381 311 SUPERFAMILY DNA-binding domain 125 182 IPR016177 GO:0003677
Eupl08g00381 311 MobiDBLite consensus disorder prediction 182 242 - -
Eupl08g00381 311 SMART rav1_2 125 188 IPR001471 GO:0003700|GO:0006355
Eupl08g00381 311 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 37 242 - -
Eupl08g00381 311 PRINTS Ethylene responsive element binding protein signature 148 164 IPR001471 GO:0003700|GO:0006355
Eupl08g00381 311 PRINTS Ethylene responsive element binding protein signature 126 137 IPR001471 GO:0003700|GO:0006355
Eupl08g00381 311 Pfam AP2 domain 125 174 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00381 Eupl-Chr8 6620580 6621560 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00381 8 239 AP2-EREBP Transcription Factor Family AT4G27950 50.840 6.89e-64 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Eupl08g00381 AP2 2.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00381 - - nnu:104593412 313.538