Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00372 ATGACTGATGCGGCGGAGGGTGCACACCTTAGAAGGAAAGAGAGCGATCCTTCCGTGAAACCAGACAGCTGTAACAAAATGAGACCGCCGGCAATGTTTATATCAGGAAGCAATTGGCCGGAGAGCTCGCCCCAAGTGTTTACCAATGCTTTACAGGGTGAGAGTGTAAGTAGATGTGTAACTTCTATAGCTGAATCTGAACTTCCGCGTACTAGCCCGTGCTCCATGAGTGATGCCGGTGTCATGGTTGAAGAGTTAACACTGAGAAATTACAAGAATCTCAACGTAGCGGTAGTTGGTAGCTCAAATAGTAGGGAGGGAATGCAGATTAGGCAGGGCCAGTGGCAACATCTTTATCAGCTGGCAGGTGGATTGGGTAATGGGAGTTTGCATGGAGATACTGTGTCCCAAGGCAAGGAGATGGTTGCAATGCGTAAGCCTCAGACCTGTAAGCAATCCCATCAAGATTGTGCTGAAATCTCCGAACATTTAATCAATAGTGATAATACCATATCCAACAATACATCATCTCCAAGAGGGACCCCAGTACCCGCATCTGGTTTTTCTAAGTTTTTTGTTAAGAATGTCTTGAAGGGGAAGGGGGTTGTATATAAACATCCAGAAGTTCATGATGGATTTGGTGTTGTGGCCTCGGGCCAGGATAAAGAAAAGGCAGCTTGTGTCACTCAGTTAGCTTCCAATGAATCACTTAATTCAAGTGCAAAAACAGATGATCCCTCCCTAAAAAGTATTGCTGGGGCTGCTCCTGGTTCGTTTCGTGATGAAATCAGCTTACGGGAGTGGCTGAAACCTTCGTGCCGTAAAATAAATAAAGCTGAGTGCCTGCATATATTTAGGCAGATTGTGGAGCTCGTGGATCTGGCACACTCTCAACAAGTTGCCTTGCAAGATATACGGCCATCTTATTTCAAGTTGTTGCCATCAAATCGAATTAAATATGTTGGGTCGTTGGCCCGGAGAGAGTTGTTAGAGAGTGTAATGGATCAGTATATTCCCAGCTCAGAGCATCATTTGAGCAGGAAAAGGTACTTGGAAAAGGGTTCACATGCCGACAATAGTTTACGTCCAAAGCATCTAAAACTCATGGAGAACATGAAATTTGGTCAACAGCATCCCCGTTTTCCAGCTAGATTTGACTTCAAGTGCAAAACTGTTAAAGAGGTCGATATTAACAGTATTGGGGCGCAAGATTCTGGGTTTGATACCAGGGGCCAACATAACTCAAATCCAGAACAAAAGACTCAAAACAGGTCTGACAGCCCAAGTGTATCTAATATTGCTCGACAGAAGTTGACCTCTGTAAACGTTCAGTTGGAAGAGAAGTGGTATACTAGTCCAGAGGAGCTCAATGAGAGGGTGCCCACATTTTCATCAAACATCTACAGTCTTGGGGTTCTTCTATTTGAGCTGTTTTGCTGTTTTGAATCGTGGGAAGTGCATGCTGCAGCAATGTCGGATCTACGGCATCGGATTCTTCCTCCAAATTTTCTATCAGAAAATCCCAAGGTGGTTGGCTTCTGTCTCTGGCTTCTTCATCCAGAGTCGTCCTCACGGCCAACAACAAGGGAAATCCTACAGTCTGAATTAATATGCGTACCTCGTGAGTTGTTGTCTGGAGATGAAACATCATTATCTGTCGATGAAGATGATACTGAATCAGAGCTATTGTTGCATTTTCTCATATCTTTGATAGAACAAAAGCAGAAGCAGGCATCCAAGTTAGCTGAAGACATTGGATGCTTAGAAGCAGATGCCAAGGAGGTTGAGAGAAGGCACTTATTAAGGACAACTGGAATGCCTTCTTGGACACATAAGGATTCCTCAAGTGCAAGAGAACCAGGGTTCCTTCATAATAAACCTTTATGCTCGGAGGCGCTCTCTAGGTTATCATCCTCGTCAAATATGAATGAGGCAAGGTTGATGAGGAATATTAATCAGCTTGAAAATGCTTACTTCTCCATGAGATCCCAAATTCGGCTTGCCGAAACTGATTCCACGGCACGCTTGGATAATGATTTACTAAAGATTCGAGATAGATGGCCTCCATTACAAAATGAGAATGAGGAGTGGGGCCTGAACCAGAAACCTATTGATCACCTTGGGGTCTTTTTTGATGGTTTATGCAAGTATGCACACTATAGTAAGTTTGAAGTACTCGCGACATTAAGAAATGGTGATCTCTTTAATTCTGCAAATGTGATTTGCTCTTTGAGTTTCGACCGGGATGAGGACTACTTTGCAGCTGCTGGGGTGTCAAAGAAAATTAAAATCTTTGAGTTCGGTGCACTCTTGAATGATTCTGTTGATATTCATTACCCTGTGATTGAGATGTCATGCAAATCTAAGCTTAGTTGTGTTTGCTGGAACAACTACATCAAGAACTATCTGGCTTCAACTGATTATGATGGTGTGGTTCAGCTTTGGGATGCTAGTACTGGTCAAGGGTTTTCTCAATACATAGAGCACGAAGGGAGAGCTTGGTCTGTTGACTTTTCTCAAGTTGATCCCACAAAGCTGGCCAGCGGAAGTGATGATTGTTCTGTAAGGCAATGGAGCATTAATGAGAGAAAATGTATTGGCAAAATCAGGAATATTGCCAATGTCTGCTGTGTTCAGTTCTCTGCTCACTCCTCCCATTTGTTGGCTTTCGGATCTGCTGATTACAAGACCTACTGCTATGATCTTCGAAATACAAATATCCCTTGGTGTACATTGGTCGGGCACGGAAAAGCTGTTAGCTATGTGAAGTTCTTAGACTCAGAGACCCTTGTTTCTGCATCCACTGATAACACACTAAAGCTCTGGGATCTCAACAAAACCAATTCTAGTGGGCTGTCTACTAGTGCCTGCAGCTTAACCTTTACTGGTCATACTAATGAAAAGAACTTTGTGGGCTTATCTGTTTCTGATGGATATATAGCATGTGGTTCTGAAACAAACGAGGTTTATGCTTATTATAGATCTCTCCCTATGCCAATCACTTCGCACAAATTTGGTTCCACTGATCCTATTTCGGGGCAAGAGACGGGTGATGACAATGGACAGTTTGTCTCCAGTGTGTGTTGGAGACGGAAGTCAAACATGGTTGTTGCTGCCAACTCTAGTGGGAGTATAAAACTGTTGCAGATGGTGTAA 3156 0.4338 MTDAAEGAHLRRKESDPSVKPDSCNKMRPPAMFISGSNWPESSPQVFTNALQGESVSRCVTSIAESELPRTSPCSMSDAGVMVEELTLRNYKNLNVAVVGSSNSREGMQIRQGQWQHLYQLAGGLGNGSLHGDTVSQGKEMVAMRKPQTCKQSHQDCAEISEHLINSDNTISNNTSSPRGTPVPASGFSKFFVKNVLKGKGVVYKHPEVHDGFGVVASGQDKEKAACVTQLASNESLNSSAKTDDPSLKSIAGAAPGSFRDEISLREWLKPSCRKINKAECLHIFRQIVELVDLAHSQQVALQDIRPSYFKLLPSNRIKYVGSLARRELLESVMDQYIPSSEHHLSRKRYLEKGSHADNSLRPKHLKLMENMKFGQQHPRFPARFDFKCKTVKEVDINSIGAQDSGFDTRGQHNSNPEQKTQNRSDSPSVSNIARQKLTSVNVQLEEKWYTSPEELNERVPTFSSNIYSLGVLLFELFCCFESWEVHAAAMSDLRHRILPPNFLSENPKVVGFCLWLLHPESSSRPTTREILQSELICVPRELLSGDETSLSVDEDDTESELLLHFLISLIEQKQKQASKLAEDIGCLEADAKEVERRHLLRTTGMPSWTHKDSSSAREPGFLHNKPLCSEALSRLSSSSNMNEARLMRNINQLENAYFSMRSQIRLAETDSTARLDNDLLKIRDRWPPLQNENEEWGLNQKPIDHLGVFFDGLCKYAHYSKFEVLATLRNGDLFNSANVICSLSFDRDEDYFAAAGVSKKIKIFEFGALLNDSVDIHYPVIEMSCKSKLSCVCWNNYIKNYLASTDYDGVVQLWDASTGQGFSQYIEHEGRAWSVDFSQVDPTKLASGSDDCSVRQWSINERKCIGKIRNIANVCCVQFSAHSSHLLAFGSADYKTYCYDLRNTNIPWCTLVGHGKAVSYVKFLDSETLVSASTDNTLKLWDLNKTNSSGLSTSACSLTFTGHTNEKNFVGLSVSDGYIACGSETNEVYAYYRSLPMPITSHKFGSTDPISGQETGDDNGQFVSSVCWRRKSNMVVAANSSGSIKLLQMV* 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00372 1051 PANTHER PROTEIN SPA1-RELATED 2 5 1051 IPR044630 GO:0009640
Eupl08g00372 1051 Coils Coil 571 598 - -
Eupl08g00372 1051 ProSiteProfiles Trp-Asp (WD) repeats profile. 912 952 IPR001680 GO:0005515
Eupl08g00372 1051 ProSiteProfiles Protein kinase domain profile. 119 537 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl08g00372 1051 FunFam E3 ubiquitin-protein ligase RFWD2 isoform X1 709 1051 - -
Eupl08g00372 1051 MobiDBLite consensus disorder prediction 1 29 - -
Eupl08g00372 1051 Gene3D Transferase(Phosphotransferase) domain 1 261 540 - -
Eupl08g00372 1051 Gene3D - 711 1051 IPR015943 GO:0005515
Eupl08g00372 1051 SMART WD40_4 777 816 IPR001680 GO:0005515
Eupl08g00372 1051 SMART WD40_4 819 859 IPR001680 GO:0005515
Eupl08g00372 1051 SMART WD40_4 905 943 IPR001680 GO:0005515
Eupl08g00372 1051 SMART WD40_4 722 766 IPR001680 GO:0005515
Eupl08g00372 1051 SMART WD40_4 1010 1049 IPR001680 GO:0005515
Eupl08g00372 1051 SMART WD40_4 862 901 IPR001680 GO:0005515
Eupl08g00372 1051 SMART WD40_4 954 993 IPR001680 GO:0005515
Eupl08g00372 1051 Pfam WD domain, G-beta repeat 826 859 IPR001680 GO:0005515
Eupl08g00372 1051 Pfam WD domain, G-beta repeat 911 943 IPR001680 GO:0005515
Eupl08g00372 1051 SUPERFAMILY WD40 repeat-like 738 1048 IPR036322 GO:0005515
Eupl08g00372 1051 ProSitePatterns Trp-Asp (WD) repeats signature. 930 944 IPR019775 -
Eupl08g00372 1051 MobiDBLite consensus disorder prediction 402 432 - -
Eupl08g00372 1051 MobiDBLite consensus disorder prediction 1 21 - -
Eupl08g00372 1051 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 912 945 - -
Eupl08g00372 1051 SUPERFAMILY Protein kinase-like (PK-like) 263 534 IPR011009 -
Eupl08g00372 1051 SMART serkin_6 212 537 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl08g00372 1051 PRINTS G protein beta WD-40 repeat signature 930 944 IPR020472 -
Eupl08g00372 1051 PRINTS G protein beta WD-40 repeat signature 846 860 IPR020472 -
Eupl08g00372 1051 PRINTS G protein beta WD-40 repeat signature 803 817 IPR020472 -
Eupl08g00372 1051 ProSiteProfiles Trp-Asp (WD) repeats profile. 826 868 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00372 Eupl-Chr8 6457228 6482426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00372 823 992 Miscellaneous Gene Families AT5G08390 25.581 7.63e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Eupl08g00372 WD40 0.0087 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00372 K16240 - nnu:104603953 1394.79