Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00364 ATGGCAGAAACTATTGCCGAGATGCCCATTGATGCCAACCCAGTTCCTGCAAAGAAAGGAAAGAACAGAAAGCCATTGAAGCCGAAAAACGAATCTGCAAATGAGGTCAACATCTTGGCCAAAAAGATTTCTCAACCCTCTTCTTCCCCTCAACCAGCATTCGAAGATGTCGGAAAGGAGAACCAACAAACCCTCTTGTCACCCAAGAAAACTAGAGCTGCTTCAAAGACGAAAGACTCCAAGAAATCTTTCGAGAAAGAGTTGCAAGAAATGCAAGGAAAGCTCAAACAACTGCATCTTGAGAAAGAGAAGACTGAGGAGCTGTTGAAGTACCGGGATGAGATGTTGAAGCAGAAAGAGGAAGAACTCGAAAATAGAGGCAGAGAGCAGGAGAAGCTTCAGTTGGAGCTGAAAAAGTTGCAGAAATTGAAGGAGTTCAAACCCACCATGAACTTTCCTATTGTTCAATCTCTGAGAGAAAAGGACCAAGAAAAGAAAGAGAAGAACAAGAAGAAGGTGTGCCGCCCGGAAAAGAAGAAACCATCTCCTGCGTATATCTTATGGTGCAAAGATCTATGGAATGAGGTCAAAAAAGAGAACCCAGATGCAGAGTTCAAAGAAATCTCAAACATATTAGGAGTGAAATGGAAGAGCCTTAGCGAAGAAGATAAGAAGCCATATGAGGAAAGATATCAGGCTGACAAAGAAGTGTATCTACAAATTGTCGGGAAGGAGAAACGCGAGAACGAAGCAATGAAACTCCTCGAGGAAGAGCAGAAACAGAAGATGGCAATGGAGTTGCTCGAACAGTATCTCCAGTTTATACAGGAGACAGATAAAGAGCACAAGAAGACGAGGAAAGAACGGGATCCTCTAAAACCAAAGCAGCCTCTATCAGCTTTCTTCCTGTTCTCCTCCGAGCGGCGAACAACTCTGCTTGCAGAGAACAAGAATGTTTTGGAGATTGCTAAGATCGCAGGGGAGGAATGGAAGAACATGACTGAAGAACAGCGAGGACCTTATGAAGAGATTGCGAAGAAACATAAGGAAGAGTATCTGCAAGAAATCGAACTCTACAAACAGAAGAAGGATGAGGAAGGTGCAACTAGTCAAAAGAAAGAGGAAGAAAATATGAAGATTCAGAAACATGAGGCCATGCAGCTGCTAAAGAAGAAGGAGAAGACAGAAATGATAATCAAGAAATCGAAAGAGAACAGCCGGAAGAAAAAGAAGCAGAAGGAAGGACAGAATACAGACTCCAACAAACCGAAGAGGCCTGCCTCTTCATTCCTTCTCTTCAGCAAGGAGACAAGGAAGAATTTGCTGCAGGAAAGACCAGGCATCATCAACTCCACCCTCAATGCTCTGATTTCAGTGAAATGGAAGGAACTGAATGAAGCCGAGAGACAAATCTGGAATGATAAAGCAGCAGTAGCCATGGAGGCATACAAAAGGGCATTGGAAGAATACAACAAATCTGCGGGGGCCATGGACCAGCATAACCCACAACCATGA 1515 0.4363 MAETIAEMPIDANPVPAKKGKNRKPLKPKNESANEVNILAKKISQPSSSPQPAFEDVGKENQQTLLSPKKTRAASKTKDSKKSFEKELQEMQGKLKQLHLEKEKTEELLKYRDEMLKQKEEELENRGREQEKLQLELKKLQKLKEFKPTMNFPIVQSLREKDQEKKEKNKKKVCRPEKKKPSPAYILWCKDLWNEVKKENPDAEFKEISNILGVKWKSLSEEDKKPYEERYQADKEVYLQIVGKEKRENEAMKLLEEEQKQKMAMELLEQYLQFIQETDKEHKKTRKERDPLKPKQPLSAFFLFSSERRTTLLAENKNVLEIAKIAGEEWKNMTEEQRGPYEEIAKKHKEEYLQEIELYKQKKDEEGATSQKKEEENMKIQKHEAMQLLKKKEKTEMIIKKSKENSRKKKKQKEGQNTDSNKPKRPASSFLLFSKETRKNLLQERPGIINSTLNALISVKWKELNEAERQIWNDKAAVAMEAYKRALEEYNKSAGAMDQHNPQP* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00364 504 Coils Coil 342 369 - -
Eupl08g00364 504 SUPERFAMILY HMG-box 165 240 IPR036910 -
Eupl08g00364 504 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 423 491 IPR009071 -
Eupl08g00364 504 Gene3D High mobility group box domain 402 501 IPR036910 -
Eupl08g00364 504 Gene3D High mobility group box domain 277 376 IPR036910 -
Eupl08g00364 504 MobiDBLite consensus disorder prediction 154 180 - -
Eupl08g00364 504 SUPERFAMILY HMG-box 282 370 IPR036910 -
Eupl08g00364 504 CDD HMG-box_AtHMGB6-like_rpt1 179 246 - -
Eupl08g00364 504 MobiDBLite consensus disorder prediction 1 86 - -
Eupl08g00364 504 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 11 499 IPR044601 GO:0003677
Eupl08g00364 504 SUPERFAMILY HMG-box 418 495 IPR036910 -
Eupl08g00364 504 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 294 360 IPR009071 -
Eupl08g00364 504 Coils Coil 473 493 - -
Eupl08g00364 504 SMART hmgende2 293 361 IPR009071 -
Eupl08g00364 504 SMART hmgende2 177 247 IPR009071 -
Eupl08g00364 504 SMART hmgende2 422 492 IPR009071 -
Eupl08g00364 504 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 178 246 IPR009071 -
Eupl08g00364 504 Gene3D High mobility group box domain 177 245 IPR036910 -
Eupl08g00364 504 MobiDBLite consensus disorder prediction 37 71 - -
Eupl08g00364 504 Coils Coil 74 143 - -
Eupl08g00364 504 MobiDBLite consensus disorder prediction 359 420 - -
Eupl08g00364 504 Pfam HMG (high mobility group) box 423 491 IPR009071 -
Eupl08g00364 504 Pfam HMG (high mobility group) box 294 360 IPR009071 -
Eupl08g00364 504 Pfam HMG (high mobility group) box 179 239 IPR009071 -
Eupl08g00364 504 MobiDBLite consensus disorder prediction 359 430 - -
Eupl08g00364 504 MobiDBLite consensus disorder prediction 72 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00364 Eupl-Chr8 6267129 6269835 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Eupl08g00364 HMG_box 1.6e-15 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00364 K09273 - nnu:104603963 665.611