Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00346 ATGGATTCCATTTTTGGATCTTCTGAAGCAAAAGAAAACAACACCACCCTGGACTCGATATTCCCCACGAAACTACACACAAACCAACTAAGACTAGACAAAAACACCAAATCAAAGCAGACCCAGATCCCAAACCCACCTTCTCTCTTCTCAAACTCTCTCGAAACCACAATTCTAGACCTCCAAAACCGCCTTCGTGTACCTGAAAACCGCTATGAGATGTTATCAAGAGCCTTAAATGGCAGAAAAATTAAGAAGAGCCCAAGAGATGGAGAGGGTTGCAGTCGATCACAGTCACATAATCACGAAGATGAAGACTGCATCGTGGGGCTCATGGGTGATCTCCCACTAAGCTTCTGTGATGGTGTTCGTGATGGGACGTCCAACACAACCAGGGTAGGTCTTGGTTTGAGAGAGGTGTTGCAGTGTTCCGTACAGGTGATGGGGGAGAGCGGTTTAGGGATATCTGAGAAGGTGGTTTTGTCGGATAAATTGGTTTACGCAGCAAAGCGGTTTCGGATTGTAACTGTTAGTAGAAAGGAGTTTGGGAGGAGAGTTGAGCGCCTAGCGCAAGTTAGCAGGGGCAGCGACGATCTTGTGCCGGTGAGGGCGTATTTATATGCCAAGCGGATCAAGCTCGTTCTTTGTGATTACTTTCCCATGGGAAGCCTCGAGGACTTGCTTACTGGTGCAAGGGACCTTGGTCACACCCCTTTAGATTGGGATCAACGGCTCAAAATAGTTCTCCATGTTGCGAGAGCCATCGCTTACATCCACATTCAATCTCCCACAGAGAAAAACCTCCAAATTAACGTGCATGGCGACATCAAAGCCTCTAATGTCCTAATAAAGAACGATTTGACCGCCTGTTTGTCGGATTACGGCTTCGTTCAACTGGCGGCGGAGCCGCCTCCGCCATCAGAAGTTCTCGGCGTATCGCAACAGAAGCTACCGGAGACAAACAACTTGGCTGAGAAGTTGTCTCAGAAGAGTGACATCTATAGCTTTGGGTTCATGGTATTGGACATGCTAGCGGGACCCAAAGCTACATCTCAGTTGCACTGCGTATTAGAAAAAAAAGAGGAGATAAAGGAAGGGGTGATAGAATTTTTTGAGTTCTTTGTACAAGCAGGGGCAAAGAGGAAGCAGGCGTTGCAGGTTTTGGACCTAGCTTTGGCTTGTACAAACAGGGCTCCGGAGGCTAGGCCTTCAATACGTCAGATAGTGTTATATCTGGAAGAAGTTTCGAGTACTGGATAA 1260 0.473 MDSIFGSSEAKENNTTLDSIFPTKLHTNQLRLDKNTKSKQTQIPNPPSLFSNSLETTILDLQNRLRVPENRYEMLSRALNGRKIKKSPRDGEGCSRSQSHNHEDEDCIVGLMGDLPLSFCDGVRDGTSNTTRVGLGLREVLQCSVQVMGESGLGISEKVVLSDKLVYAAKRFRIVTVSRKEFGRRVERLAQVSRGSDDLVPVRAYLYAKRIKLVLCDYFPMGSLEDLLTGARDLGHTPLDWDQRLKIVLHVARAIAYIHIQSPTEKNLQINVHGDIKASNVLIKNDLTACLSDYGFVQLAAEPPPPSEVLGVSQQKLPETNNLAEKLSQKSDIYSFGFMVLDMLAGPKATSQLHCVLEKKEEIKEGVIEFFEFFVQAGAKRKQALQVLDLALACTNRAPEARPSIRQIVLYLEEVSSTG* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00346 419 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 82 416 IPR046959 -
Eupl08g00346 419 SMART serkin_6 142 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl08g00346 419 Gene3D Transferase(Phosphotransferase) domain 1 139 418 - -
Eupl08g00346 419 SUPERFAMILY Protein kinase-like (PK-like) 146 413 IPR011009 -
Eupl08g00346 419 Pfam Protein kinase domain 148 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl08g00346 419 MobiDBLite consensus disorder prediction 80 101 - -
Eupl08g00346 419 ProSiteProfiles Protein kinase domain profile. 142 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00346 Eupl-Chr8 6028662 6030866 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00346 129 415 Receptor kinase-like Gene Family AT5G58300 33.220 5.37e-48 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Eupl08g00346 Pkinase 2.9e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00346 - - msin:131241251 357.066