Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00340 ATGGTTTTGGGAGTGGGGGACTTTTGGCTTCGTTTTCTGCTTCGACTCATTTTAACCAGGCTCAATAGAAGCTCCACTTGGACTCCATTAATGGCGGACTCCAGTGAAACTCCTCAACCGTCTGAACCAGTCTGCAGTTTCTTCCGAAAACCATCGAAAAACAAAAACATCAGAAAACGAACGATCGAAGAAGACGAACTTGAAGAAGATTCGAAAACCGTGATCCACAAGCAGAAAAAGCCCCCAAAGCCAGACAGCAAGCTACATTTCTCGACAGAATCGTCGAAGCGATCGGTAGCAGTTGAATCTACCGAAGAATCTGATACGCCGATCTTTCATTTCGAGTCTTCGAAGGAAATTCAAGTTCAACATGATAGCAGAGCGACAGCAACCCTAGAAACAGAGACGGAGTTCTCCAAAGACGCTCGAGCAATCCGAGAGAGAGTTCTTAAGCAAGCAGAGAATGCTCTGAAGGGAAAAACTAAGAGTTCTGGTGACGAGAAGCTGTATAAAGGGATCCATGGTTATACAGACTACAAGGCTGGGTTCCGAAGAGAACAGACAGTTTCTGGAGAGAAAGCTAGTGGGGCACATGGGCCTCTTAGGGCTTCTGCTCATATTAGGGCGTCGGCGAGGTTTGATTACCAGCCGGATATTTGTAAGGATTACAAGGAGACTGGGTATTGTGGGTTTGGAGATGCGTGTAAGTTTATGCATGATAGAGGGGATTATAAGTCTGGATGGCAGATGGAGAGGGAATGGGAGGAAGCAGAGAAAGTGAGGAAGAGGAATCTAGCTTTGGGAGGTGATGATGATGATGAGCAAGGAGGAGCGGGTCAGAGTGATGACGACGAGGATGATGCATTGCCGTTTGCATGTTTCATTTGTCGACAACCTTTCGTGGATCCTGTTGTCACCAAGTGCAAACACTACTTTTGTGAACATTGTGCTTTGAAGCATCATTCTAAGAACAAGAAGTGCTTTGTTTGCAACAAGGCTACCCTTGGCATCTTCAACACGGCTCATGAGATTCGGAAAAAGATGGCCGCAGAGGGAAAATAA 1062 0.4614 MVLGVGDFWLRFLLRLILTRLNRSSTWTPLMADSSETPQPSEPVCSFFRKPSKNKNIRKRTIEEDELEEDSKTVIHKQKKPPKPDSKLHFSTESSKRSVAVESTEESDTPIFHFESSKEIQVQHDSRATATLETETEFSKDARAIRERVLKQAENALKGKTKSSGDEKLYKGIHGYTDYKAGFRREQTVSGEKASGAHGPLRASAHIRASARFDYQPDICKDYKETGYCGFGDACKFMHDRGDYKSGWQMEREWEEAEKVRKRNLALGGDDDDEQGGAGQSDDDEDDALPFACFICRQPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVCNKATLGIFNTAHEIRKKMAAEGK* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00340 353 SUPERFAMILY CCCH zinc finger 213 245 IPR036855 GO:0046872
Eupl08g00340 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 291 350 IPR013083 -
Eupl08g00340 353 PANTHER ZINC FINGER PROTEIN 183 37 351 IPR039971 -
Eupl08g00340 353 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 215 240 IPR000571 GO:0046872
Eupl08g00340 353 SMART ring_2 293 330 IPR001841 -
Eupl08g00340 353 ProSitePatterns Zinc finger RING-type signature. 308 317 IPR017907 -
Eupl08g00340 353 MobiDBLite consensus disorder prediction 265 284 - -
Eupl08g00340 353 SUPERFAMILY RING/U-box 292 335 - -
Eupl08g00340 353 MobiDBLite consensus disorder prediction 29 108 - -
Eupl08g00340 353 ProSiteProfiles Zinc finger C3H1-type profile. 214 242 IPR000571 GO:0046872
Eupl08g00340 353 CDD RING-HC_RNF113A_B 286 339 - -
Eupl08g00340 353 MobiDBLite consensus disorder prediction 57 92 - -
Eupl08g00340 353 SMART c3hfinal6 214 241 IPR000571 GO:0046872
Eupl08g00340 353 Gene3D - 212 246 - -
Eupl08g00340 353 FunFam RING finger protein 113A 291 350 - -
Eupl08g00340 353 ProSiteProfiles Zinc finger RING-type profile. 293 331 IPR001841 -
Eupl08g00340 353 Pfam Zinc finger, C3HC4 type (RING finger) 292 332 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00340 31 351 C2H2 Transcription Factor Family AT1G01350 67.552 1.88e-162 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Eupl08g00340 zf-C3HC4_3 4.6e-08 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00340 K13127 - ming:122070568 553.132