Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00335 ATGCCTGGTCAGCTTCTATCACTTAGATTGCTGAACGGTTCCGTCTCGGCCAGCGGTTTCTCCACCATGAAACTCGGTGCAACCTTTCAATCTTCTCGTGGAATCTCCATTTTCAGTAGAGTCTTCCCATTCAAGCTTAAATACATGGGGTTTTCGAGAAAATTAGGGGTTCCTGTGTTGCGGAACGAGGAATCTAGAGTCCGGAGGTTTTCAAGCGGTTCGTTTCGGGCTAGAAATGGTGGTGGTAGTAGAAGCGGTGATCAGAATTCGGAGTTTTCACGCAGTCGTGGTGTAGAGAGAGGAGACTTTCAGGCTGAGAGTATTGGCGGGAGAGGCGGAAAAGTGAAGAGCCTAGTCGAGGATGAAGCAGAACTTAGTGATTGGATCAGTGAATTGAAAACAGATTCTTTTCGTGTTGGATTGAACAGTGAAAGCGATAATCCGGATACTGATATTGGTAGGATTAGGGATAGGGACAGGGGTAGAGGACCTAGAGGTAGGGATTCCACTTCCTCTTTGAAAAGCCAGAGAGGTGGAAGGGATGGGTTCTCGTCAAAGAGGCGGAGAGATGGTGATTCAGATAATTTTGCCATTTCTAATAGCAGAAGCTCTCGGAGCATGACTGGTCCTTTTTCAAAGAATTCAAGGGGTTCTATGTCTGGTTCTGTCCCGAAGAGACGATCTTTTAGTGAGTCGGAGGATGAAGAGTTGCCTCCAAGAAGGAGGGAGCTTGGATCTCGAGGTGCAGTTTCTTCCCCGGTGAAGAGAGGTGGAGGTGCAGTTTCTTCCCCGGTGAAGAGAGGTGGAGGTGCAGTTTCTTCCCCAGTGAAGAGAGGTGGACGAGATTCTGATTTGAGTTATGGACGGAGTCAAGGTGGGAATGTACAGAAAGGAAGGATGGGTTCTGGAAGACAAGCTCTTCTGATCTCAGACAATGAAGATGATGATGAAGAGGAGGATGAGGATGAGGATTCAATCTCTGATTTTGGAGATTTGCTCAGCGAAGAAGATAATGAAGAAGATAGCGAAGAAGATAGTGATAAGGATGTCTTTAAGGGTGCAAATTCATTGCATGTATCGGTCAAAGAAGATAGCTCACAGCCAATGCCTAAAGTTTCAACTGGAGAAGCCAACTCTTACCTAAGTCAGACATGGTTTGATCAATGTTCGATATCTCCCTTGTCATTAAAAGGAATAAAGGATGCTGGATACGAGAGGATGACCATGGTGCAGGAGGCAACTCTTCCTGTCATTCTCAAAGGCAAGGATGTTCTGGCCAAGGCAAAGACAGGCACTGGAAAAACTGTAGCATTTTTGCTTCCGGCAATTGAAGCAATCGTAAAATCGCCTCCTGTTGATCGCGATCAAAGGAGACCCCCGGTCAGTGTGCTTGTTATGTGCCCAACGCGAGAGCTTGCAAGTCAAGCTGCTGCAGAGGCTAACACCCTGTTGAAGCATCATCCTTCTATTGGTGTACAAGTTGTAATAGGAGGTGTAAGACTAGCTCTAGAGCAGAAACGCTTGCAAGCAAACCCTTGTCAGATTCTTGTTGCCACACCTGGAAGGCTTAAAGACCATATTGAGAATACAGCAGGATTTGCAACTAGGCTAATGGGTGTAAAAGTGCTTGTCCTTGATGAAGCCGACCATCTATTAGATATGGGATTCCGAAAGGATATTGAGAAGATCATTGCTGCTGTTCCAAAACAGCGACAAACACTTCTATTTTCTGCGACTGTTCCAGAAGAGGTTCGTCAAATCTGCCACATTGCTTTAAAAAGAGACCATGAATTTATCAACACAGTCGAAGAGGGTAGTGAGGAGACACACTCGCAGGTCCGACAGATGCATCTAGTTGCTCCACTAGAGAAGCATTTTTCATTGCTATATGCTCTTTTGAAAGAGCATATTTCAGACGATGTTGACTATAAGGTTCTTGTATTCTGCACAACTGCAATGGTCACGAGACTTGTAGCAGACCTTCTTTCTCAGCTGAACTTAAATGTACGGGAGATCCATTCTAGAAAGCCGCAGAGTTATAGAACCAGGGTTTCTGATGAGTTCCGAAAGTCAAAAGGTCTTATTCTTGTGACTTCTGATGTATCTGCCCGTGGAGTTGATTATCCAGATGTTACCCTTGTTATACAGGTAGGCTTGCCATCTGATAGACAACAGTATATACACCGACTTGGTAGAACAGGCCGAAAAGGTAAAGAAGGGCAAGGCATATTGTTGATGGCCCCTTGGGAGGAGTTCTTTTTATCTAGTGTCAGGGATTTGCCAATATCAAAGGCTTCAGCACCTTCAGTTGATCCAGACACCAGGAAGAAAGTGGAGCGGGCTTTATCTCAGGTAGAGATGAAAAACAAAGAAGCGGCATACCAAGCATGGCTCGGCTACTACAATTCCAATAAGACTGTGGGCCGGGACAAGTGCCGGCTCGTGGAGCTTGCAAACGATTTTAGCAGGAGCATGGGGCTTGACAACCCTCCTGCCATTCCCAAGCTTGTCCTTGGCAAGATGGGCCTCAGGAATGTCCCTGGTCTGCGATCTAAGTAG 2559 0.4603 MPGQLLSLRLLNGSVSASGFSTMKLGATFQSSRGISIFSRVFPFKLKYMGFSRKLGVPVLRNEESRVRRFSSGSFRARNGGGSRSGDQNSEFSRSRGVERGDFQAESIGGRGGKVKSLVEDEAELSDWISELKTDSFRVGLNSESDNPDTDIGRIRDRDRGRGPRGRDSTSSLKSQRGGRDGFSSKRRRDGDSDNFAISNSRSSRSMTGPFSKNSRGSMSGSVPKRRSFSESEDEELPPRRRELGSRGAVSSPVKRGGGAVSSPVKRGGGAVSSPVKRGGRDSDLSYGRSQGGNVQKGRMGSGRQALLISDNEDDDEEEDEDEDSISDFGDLLSEEDNEEDSEEDSDKDVFKGANSLHVSVKEDSSQPMPKVSTGEANSYLSQTWFDQCSISPLSLKGIKDAGYERMTMVQEATLPVILKGKDVLAKAKTGTGKTVAFLLPAIEAIVKSPPVDRDQRRPPVSVLVMCPTRELASQAAAEANTLLKHHPSIGVQVVIGGVRLALEQKRLQANPCQILVATPGRLKDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVEEGSEETHSQVRQMHLVAPLEKHFSLLYALLKEHISDDVDYKVLVFCTTAMVTRLVADLLSQLNLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDRQQYIHRLGRTGRKGKEGQGILLMAPWEEFFLSSVRDLPISKASAPSVDPDTRKKVERALSQVEMKNKEAAYQAWLGYYNSNKTVGRDKCRLVELANDFSRSMGLDNPPAIPKLVLGKMGLRNVPGLRSK* 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00335 852 CDD SF2_C_DEAD 613 745 - -
Eupl08g00335 852 MobiDBLite consensus disorder prediction 196 226 - -
Eupl08g00335 852 MobiDBLite consensus disorder prediction 149 167 - -
Eupl08g00335 852 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 632 783 IPR001650 -
Eupl08g00335 852 MobiDBLite consensus disorder prediction 180 195 - -
Eupl08g00335 852 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 415 598 IPR014001 -
Eupl08g00335 852 MobiDBLite consensus disorder prediction 139 351 - -
Eupl08g00335 852 MobiDBLite consensus disorder prediction 311 346 - -
Eupl08g00335 852 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 384 412 IPR014014 GO:0003724
Eupl08g00335 852 SMART ultradead3 403 616 IPR014001 -
Eupl08g00335 852 Gene3D - 333 599 IPR027417 -
Eupl08g00335 852 Pfam Helicase conserved C-terminal domain 628 737 IPR001650 -
Eupl08g00335 852 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 308 576 IPR027417 -
Eupl08g00335 852 CDD DEADc_MSS116 391 600 - -
Eupl08g00335 852 Gene3D - 607 830 IPR027417 -
Eupl08g00335 852 SMART helicmild6 656 737 IPR001650 -
Eupl08g00335 852 MobiDBLite consensus disorder prediction 76 92 - -
Eupl08g00335 852 Pfam DEAD/DEAH box helicase 408 586 IPR011545 GO:0003676|GO:0005524
Eupl08g00335 852 PANTHER RNA HELICASE 324 779 - -
Eupl08g00335 852 MobiDBLite consensus disorder prediction 227 243 - -
Eupl08g00335 852 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 461 753 IPR027417 -
Eupl08g00335 852 MobiDBLite consensus disorder prediction 71 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00335 Eupl-Chr8 5887029 5893963 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00335 384 765 Eukaryotic Initiation Factors Gene Family AT3G19760 28.900 1.98e-45 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00335 - - nnu:104603988 1139.41