Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00328 ATGTCATTAAACTTTCATTTTCTGAGTGATTCATCGAAGGCAAAGTCTAAATCTAGAAAGAAAATTCTTGACCCACAGGGTCCATTTCTTCAAAGGTGGAACAAGATATTTTTGTTATCGTGTGTGATTGCAGTTTACCTGGATCCCTTGTTCTTTTACATCCCAGTGATTGACGACAAGAAGCATTGCATTGATTTAGATAAGAAGTTGGAGATCACAGCTTGTGTTCTGCGTTCCTTCATTGATATCTTTTATATCCTTCGCATTATCTTTCAATTCCGTACTGGTTTTATTGCTCCTTCTTCTCGAGTATTTGGAAGGGGTGTTTTGGTTGAAGATCCTATGGCAATTGCTAAACGATACTTGTTGTCCTACTTCCTGATTGACATTCTTGCAGTTCTTCCCCTTCCACAGGTGGTATTTTTGATCATCATCCCCAAATTGAGAGCATCAGTAGATTTGAATATAAAGTTCTTGTTGTGGTCTGTTATTCTATTCCAGTATTTTCCAAGGTTTCTTCGAATATATCTACTGTACAAAGAAGTGAGACGAACGATCATAATCACTAAAACAGCATGGGTCGGAGCTGCTTTCAATTTCTCCGTCTACATGCTTACAAGTCATATATTTGGAGCCTCTTGGTACTTTCTTTCGATCGAGAGAGAAAGTACGTGCTGGCACAATGCCTGTAGGAGTACCGATGGATGCTATGCTGCTTCTTTATATTGTGGAGATTACAGCAGTAGAGGAGGCAATGCATTTTTATATGCCTCTTGCCCTATTATCGAACCGAATACCAGACTTTTTGATTTTGGAATATACCTTGATGCTCTTCAGTCTGGTGTGGTGGAGTCCAGAGATTTTCCACAGAAGTTGGTTTACTGCTTTTGGTGGGGCCTGCAAAATCTGGGTTCGCTTGGTCAAAACCTGAAAACAAGCACATACAATTGGGAGGTTTCTTTTGCTGTCTCTGTCTCCATCGTCGGCTTGTTTTTACTTACGCTTCTCATTGGCAATGTGCAGTTATATATGCAGTCCAACAACGTTAAATTAGAAAAAGAGATGAATATGAAATTGCAAGTTGCAGAGCGATGGATGTCCCACCGTTCACTCCCTGAGAACCTAAGGGAGCGGATCAGGCAGTATGTACAGTACAAATGGAAAGTAACGAGAGGGTATGATGAAGAGTATCTGATTTGTGATCTTCCCAAGGACCTGAGAAGGGACATAAAGCGCCATCTCTGTTTGGCTCTACTCATGAGAGTGCCAGTATTTGAAATAATGGATGAGCATCTACTGGACGCAATGTGTCATCGCCTCAAGCAAGCGCTCTACACAGACAACAGCTACATTGTCCGTGAGGGTGACCCAGTCGACGAGATGGTCTTCATCACGCGGGGCAAGCTATTAAGTGTGACCACCGATGGTGGAAGGACTGGCTTCTTCAACTCTGCTTATATCAAGGATGGGGACTTTTGTGGAGAAGAGCTGCTTACGTGGGCCCTGGACCCCCACTCCTCCAACCTCCCCATCTCGACCAGAACTGTGCGGGCCATGACGGAGGTTGAAGCCTTTGTTCTTACGCCCGACGACTTGAAGGTCGTTGCCTCCCAGTTCCGGCATCTCCACAGCAAGCAAATTCAGCACACTTTCAGGTTTTACTCAATGCAGTGGAGGACATGGGCTGCATGCTTCATTCAAGCAGCTTGGCGCAGGTACCGTAAGAAGAAATGGGAGCAGTCTCTACGTGAGGAGGATAGGTTGCAGGACGCATTGGCCAAGGGCAGTGGAAGCTCATCAAGCTTCGGTGCAACCATTTATGCCTCACGGTTTGCCACTAACACACTACGTGCCATACGGCGCAGTGGCACACGCAAGGCAAAGGCCGGAGAGAATGCCACCAATGCTGCTTCAGAATCCAGCAGAGCCTGA 1932 0.4513 MSLNFHFLSDSSKAKSKSRKKILDPQGPFLQRWNKIFLLSCVIAVYLDPLFFYIPVIDDKKHCIDLDKKLEITACVLRSFIDIFYILRIIFQFRTGFIAPSSRVFGRGVLVEDPMAIAKRYLLSYFLIDILAVLPLPQVVFLIIIPKLRASVDLNIKFLLWSVILFQYFPRFLRIYLLYKEVRRTIIITKTAWVGAAFNFSVYMLTSHIFGASWYFLSIERESTCWHNACRSTDGCYAASLYCGDYSSRGGNAFLYASCPIIEPNTRLFDFGIYLDALQSGVVESRDFPQKLVYCFWWGLQNLGSLGQNLKTSTYNWEVSFAVSVSIVGLFLLTLLIGNVQLYMQSNNVKLEKEMNMKLQVAERWMSHRSLPENLRERIRQYVQYKWKVTRGYDEEYLICDLPKDLRRDIKRHLCLALLMRVPVFEIMDEHLLDAMCHRLKQALYTDNSYIVREGDPVDEMVFITRGKLLSVTTDGGRTGFFNSAYIKDGDFCGEELLTWALDPHSSNLPISTRTVRAMTEVEAFVLTPDDLKVVASQFRHLHSKQIQHTFRFYSMQWRTWAACFIQAAWRRYRKKKWEQSLREEDRLQDALAKGSGSSSSFGATIYASRFATNTLRAIRRSGTRKAKAGENATNAASESSRA* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00328 643 Pfam Cyclic nucleotide-binding domain 445 534 IPR000595 -
Eupl08g00328 643 SUPERFAMILY cAMP-binding domain-like 353 545 IPR018490 -
Eupl08g00328 643 SUPERFAMILY Voltage-gated potassium channels 24 345 - -
Eupl08g00328 643 MobiDBLite consensus disorder prediction 622 643 - -
Eupl08g00328 643 FunFam Cyclic nucleotide-gated ion channel 1 422 539 - -
Eupl08g00328 643 Pfam Ion transport protein 32 347 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Eupl08g00328 643 CDD CAP_ED 424 554 IPR000595 -
Eupl08g00328 643 MobiDBLite consensus disorder prediction 628 643 - -
Eupl08g00328 643 Gene3D Helix hairpin bin 350 415 - -
Eupl08g00328 643 ProSiteProfiles cAMP/cGMP binding motif profile. 424 553 IPR000595 -
Eupl08g00328 643 SMART cnmp_10 424 554 IPR000595 -
Eupl08g00328 643 Gene3D - 36 346 - -
Eupl08g00328 643 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 13 617 - -
Eupl08g00328 643 Gene3D Jelly Rolls 422 541 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00328 Eupl-Chr8 5680323 5703010 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00328 18 631 Ion Channels AT5G53130 71.613 0.0 893
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00328 K05391 - thj:104825136 882.863