Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00318 ATGGGAACTTCAGAAGTCGTCGTCCCCTTCTTCCTCATCTTATTCCTCTTGTTTCCAAACAGAGCAACAAGTGAAGAAAACTGTTCAAATTCTCTGTGTAGCAAAGACGGCCCTGTTATTCGGTTCCCTTTCAGACTAGAAGGTCGTCAGCACGAGAGATGTGGCTTTCCGGGCTTCACTTTTTCTTGCAATAGTCGGAGCGAAACGGTTCTTGAGCTGCCCAACTGGGGAGAATTTTTGGTACGAGACATCGATTATGTCGCGCAGGAGGTACATATTTACGACCCGGATAATTGCATTCCGAGACGGTTGTTGAATCTCAATCTTTTCGGTTCCCCCTTCAAGGGTGTTTACTATCAAAATTACACGTTTCTCAATTGCTCAAGCGGTGTTACACCGACTCGAACCAAGCCAATCATCGATTGCCTTAGTAGCTCTACTCGGACGGTCTTGGCTGTGCCATCTATGAGTTTTGCTCGACTCGTAATCCCTCGATGCGAGATAATTGCGACCATTTCAGTTCCAGTTCCTTGGCTTTTGTCTTATGGGTATTCGTTTGACCTTAACTACGATCTTCGGCTTATGTGGGATGAACCTGATTGCGGAGGTTGTATCTCGCGAGGTGGGAAATGCAGATTCAAGAGTAACACCAGTAGTGAAATTGGATGTTTCGATGTTCCTCGACGCGGTCTTCCGAGGGGTGTACGCTACGCTATCACCGTAGGAGTCGGCATACCTGCCCTCATGTGCACCATTGGTATCGCATGCTACGTCTGTGCAAGGGTCAAGGCTTATGGAGATGGTGATAGGCGCCACCATTTCCATGCCGAGTCCTCTTCTGTAGTCTCACCACAACCCACCATCGTCGTGGTTGGCCTTGACGGACCCACTATAGAATCCTACCCAAAGATAGTCCTTGGTGAGAGCCGGCGCCTGCCCAAGCCCAATGACAACACTTGCCCGATATGTCTGTCGGAGTACCGACCCAAGGAGACACTAAGGAGTATACCTGATTGTAAACACTGCTTCCATGCTGATTGCATTGACGAGTGGCTTCGAATGAATGCTACATGTCCCCTATGCCGGAATTCCCCGACAGAGCCGCCGCCTCCTGTTCATGCTACATGA 1128 0.4929 MGTSEVVVPFFLILFLLFPNRATSEENCSNSLCSKDGPVIRFPFRLEGRQHERCGFPGFTFSCNSRSETVLELPNWGEFLVRDIDYVAQEVHIYDPDNCIPRRLLNLNLFGSPFKGVYYQNYTFLNCSSGVTPTRTKPIIDCLSSSTRTVLAVPSMSFARLVIPRCEIIATISVPVPWLLSYGYSFDLNYDLRLMWDEPDCGGCISRGGKCRFKSNTSSEIGCFDVPRRGLPRGVRYAITVGVGIPALMCTIGIACYVCARVKAYGDGDRRHHFHAESSSVVSPQPTIVVVGLDGPTIESYPKIVLGESRRLPKPNDNTCPICLSEYRPKETLRSIPDCKHCFHADCIDEWLRMNATCPLCRNSPTEPPPPVHAT* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00318 375 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 10 365 IPR046948 -
Eupl08g00318 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 290 366 IPR013083 -
Eupl08g00318 375 Pfam Ring finger domain 318 362 IPR001841 -
Eupl08g00318 375 SUPERFAMILY RING/U-box 313 368 - -
Eupl08g00318 375 SMART ring_2 320 361 IPR001841 -
Eupl08g00318 375 ProSiteProfiles Zinc finger RING-type profile. 320 362 IPR001841 -
Eupl08g00318 375 CDD RING-H2_EL5-like 320 362 - -
Eupl08g00318 375 Pfam Wall-associated receptor kinase galacturonan-binding 28 95 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00318 Eupl-Chr8 5240003 5245467 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00318 22 366 C3H Transcription Factor Family AT2G46495 41.360 4.83e-87 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00318 - - nnu:104600366 422.55