Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00307 ATGATTATCAAACGGAACATGAAATCGAAAATGCCGATTCTAAAGCGGTGCAAAGCCGAAGAATCAGGTTGCGAAGACGACGAGAGTTCGGGCAATCCGAAGAAACGGAAGGTGAACGGATATTACCCACTCGATCTGCTTGGCGAGGTTGCCGCTGGCAGAATTCCGTTTAATGGTTACGGATTCCGGGGGAGATTTGGCGATGATGGTGAGGATTTCAGCAGCGTTGCGGCTTCGTGGTGCACCGAAGTCTCTTACTGCCCTGGCGAGGTGGAATCGAAGAGCCGAAATGGTCGGAAAGGGAAGAATCAGACCGGGGAGATTTGTCGTCCGCCGCTTGTGAAAACTTCTCGAGGGCGCATTCAGGTACTCCCATCTCGTTTCAATGATTCGGTTCTTGATCCATGGAAGAAAGAAAAGACCAAAGCAAGTGCTCTAGAATTATCCAGTTTAACTGCTGCTCTAGAATTATCCAGCTTCAATGCTGAAACTGCACTTACTAAGAAGGAGGAATTTAACTGTAAAACCCCCAAGTTTGACAGTCCGATCACAAAGAAACAGCACAAGGAGGAGAAATTCAGCTACCAAAGCTCTAAATTCTATCCATTATTGGAAGAAGAAGAAGAGGTAGAAGAAGGTTATCCAGGCTTCAGAAACTCCGACATTAGAAAATATTCTAGTTCGCGTAGTTCACTTACGTCCCTTCACGAGCCCTTGGTTGAAGTCGAGAAGTCTCCACCTTTGGTAGAAGTTGAGGAGTCTCCTGGGACATTTGATTTGACGTGCAGAAAAAGAACATCAAAGGAGAACACTGAGAAGAGAAAGGGTTTCTATAGGCCGGAGGACTTTGTTTTGGGTGACATAGTTTGGGTTAAATCAGGGAAGAGGTATCCTGCTTGGCCGGCCATTGTCATTGATCCAATGTTGCAAGCTCCTGATATGGTTCTAAATTCCTGTGTTGCCGGAGCAATTTGTGTCATGTTCTTTGGATACTCGGGAAATGGAAAAGAAAGGGACTATGCATGGGTGAAACATGGAATGATTTTTCCATTCCTAGATTATGTAGACAGATTTCAGGGTCAGACCCAGTTGTACAAAAGCAAGCCCAGTGATTTTCGGATGGCTATAGAGGAGGCGTTTTTAGCAGAGCATGGCTTTGCAGAGATATTAATGGAGGAGATGAACACAGTTGCTGGTCAGCCAGCTTGTCATCAGTCTATTCCCAGAGGGATCCAAGAGGCCACTGATTCAAATCAGGATCAGGAATGTCACTCTCAGAACCAGGACATAATTCAGAAGAAAGACACACGATCTTGTGAGGGCTGTGGCTTAGGCTTACCATTTAAAACTACAAAGAAAATGAAGGGTTCCACTCCTAAAAACCAGCTTTTATGTAAGCATTGTGCTAAGTTACTAAAATCGAAACAATATTGTGGCATATGCAAGAAAATTTGGCACCATTCAGATGGCGGGAGTTGGGTACGGTGTGATGGATGTAAAGTTTGGGTTCACGCAGAGTGTGACAAAATTTCCAGCAACCTTTTCAAGGATCTGGAAGACACTGATTATTTCTGCCCCGAGTGCAAGGCAAAGTTTAATTTTGAATTATCAGATTCAGAAAAATGGCAGCCACAAATTAGATCTGACAAAAACAACGGGCTATTCTTGCTGCCTGACAAGGTAGCTGTTGTGTGCACTGGCATGGAAGGGATATATATTCCAAGTCTTCATGTAATTGTGTGCAAGTGTGGTTCCTGTGGTGAAGAGAAGCGGTCTCTTAGCGAGTGGGAGCGGCATACAGGTTCTAAAAAGAAAAATTGGAAATCTAGTGTTAAAGTGAAAGGTTCAATGCTACCACTGGAACAATGGATGCTGCTGGTCTCAGAGTATTATGAACGTGGCCTTGTTTCTGCAGATCCTCTTAAACGACCTTCCCTGAAGCTACGGAAACAGAAACTGCTTGCTTTCTTGCAAGAGAAGTATGAACCCATTTATGCCAAGTGGACGACGGAACGATGTGCTATTTGTAGATGGGTTGAAGATTGGGATTACAATAAAATTATCATCTGCAACAGATGTCAAATAGCTGTCCACCAAGAATGCTATGGAGCGAGAAATATCCGAGATTTCACTTCCTGGGTTTGCAGAGCATGCGAAACACCTGATGTCAAGAGGGAGTGTTGCCTTTGTCCTGTAAAAGGGGGAGCTTTGAAGCCATCTGATGTTGAGACATTGTGGGTTCATGTCACATGTGCTTGGTTCCAACCTGAAGTTTCTTTCTCAAGTGATGAAAAAATGGAGCCTGCGGTTGGAATCTTGAGAATTCCATCAAATTCTTTTGTAAAGGTTTGTGTGATCTGTAAGCAAATGCATGGTTCCTGCACACAGTGTTGCAAGTGTTCCACTTATTATCATGCAATGTGTGCGTCAAGGGCAGGATACCGCATGGAGTTGCACTGCTTGGAGAGAAATGGGAGTCAGGTTACAAAGATGGTCTCGTACTGTGCTTTTCACAAGGCTCCAAATCCAGATACTGTTTTAGTCATACAGAGCCCTTTAGGGGTTTTCTCTACCAAAAGCCCGATCCAAAATAAGAAGCGAACTGGTTCAAGGCTAATTTTGTCAAATAGAACAGAATTGCCAGAGGAATTAACCTTAGAAACTGATCAGAATGAACCATTGTCTGCTGCAAGGTGCCGGATCTTTAAAAGATCAAAAAACAAGAGGACAGGAGAAGAGGCAATAGCCCACCGAGTAACAGGGCATTGCAATCATTCTTTAGACGAGATAGAAAGCTTGAACACTTTTAGGGAAGAAAAGGATCCTATATCTTTTTCTACATTCAGGGAACGGCTTCACCACTTACAGAGAACTGAAAATGATAGGGTTTGCTTTGGTAGATCTGGAATACATGGATGGGGCCTCTTTGCGCGTAGAAAGATTCAGGAGGGAGAAATGGTTCTTGAGTATCGTGGTGAGCAGGTGAGGGGAAGTGTTGCTGATTTGAGGGAGGCACGCTACCGGAAGGAAGGCAAAGACTGCTATCTGTTTAAGATCAGTGAAGAAGTTGTGGTTGATGCCACAGATAAAGGGAACATAGCACGCTTAATAAACCACTCTTGCATGCCCAATTGCTATGCGAGGATAATGAGTGTGGGTGATGATCAGAGCCGGATTGTACTTATTGCTAAGACAAATGTTTGTGCTGGTGACGAGCTAACGTACGATTATTTGTTTGATCCCGACGAGTGTGATGAGTACAAAGTCCCCTGCCTCTGTAAATCTTCCAACTGCCGGAGATTCATGAATTAG 3312 0.4408 MIIKRNMKSKMPILKRCKAEESGCEDDESSGNPKKRKVNGYYPLDLLGEVAAGRIPFNGYGFRGRFGDDGEDFSSVAASWCTEVSYCPGEVESKSRNGRKGKNQTGEICRPPLVKTSRGRIQVLPSRFNDSVLDPWKKEKTKASALELSSLTAALELSSFNAETALTKKEEFNCKTPKFDSPITKKQHKEEKFSYQSSKFYPLLEEEEEVEEGYPGFRNSDIRKYSSSRSSLTSLHEPLVEVEKSPPLVEVEESPGTFDLTCRKRTSKENTEKRKGFYRPEDFVLGDIVWVKSGKRYPAWPAIVIDPMLQAPDMVLNSCVAGAICVMFFGYSGNGKERDYAWVKHGMIFPFLDYVDRFQGQTQLYKSKPSDFRMAIEEAFLAEHGFAEILMEEMNTVAGQPACHQSIPRGIQEATDSNQDQECHSQNQDIIQKKDTRSCEGCGLGLPFKTTKKMKGSTPKNQLLCKHCAKLLKSKQYCGICKKIWHHSDGGSWVRCDGCKVWVHAECDKISSNLFKDLEDTDYFCPECKAKFNFELSDSEKWQPQIRSDKNNGLFLLPDKVAVVCTGMEGIYIPSLHVIVCKCGSCGEEKRSLSEWERHTGSKKKNWKSSVKVKGSMLPLEQWMLLVSEYYERGLVSADPLKRPSLKLRKQKLLAFLQEKYEPIYAKWTTERCAICRWVEDWDYNKIIICNRCQIAVHQECYGARNIRDFTSWVCRACETPDVKRECCLCPVKGGALKPSDVETLWVHVTCAWFQPEVSFSSDEKMEPAVGILRIPSNSFVKVCVICKQMHGSCTQCCKCSTYYHAMCASRAGYRMELHCLERNGSQVTKMVSYCAFHKAPNPDTVLVIQSPLGVFSTKSPIQNKKRTGSRLILSNRTELPEELTLETDQNEPLSAARCRIFKRSKNKRTGEEAIAHRVTGHCNHSLDEIESLNTFREEKDPISFSTFRERLHHLQRTENDRVCFGRSGIHGWGLFARRKIQEGEMVLEYRGEQVRGSVADLREARYRKEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDQSRIVLIAKTNVCAGDELTYDYLFDPDECDEYKVPCLCKSSNCRRFMN* 1104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00307 1103 SMART PostSET_3 1087 1103 IPR003616 -
Eupl08g00307 1103 SMART PHD_3 477 529 IPR001965 -
Eupl08g00307 1103 SMART PHD_3 672 719 IPR001965 -
Eupl08g00307 1103 SMART PHD_3 783 839 IPR001965 -
Eupl08g00307 1103 Gene3D SET domain 863 1103 IPR046341 -
Eupl08g00307 1103 ProSiteProfiles Post-SET domain profile. 1087 1103 IPR003616 -
Eupl08g00307 1103 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1103 IPR025780 -
Eupl08g00307 1103 SMART PWWP_4 283 352 IPR000313 -
Eupl08g00307 1103 SUPERFAMILY FYVE/PHD zinc finger 671 735 IPR011011 -
Eupl08g00307 1103 Pfam PWWP domain 286 380 IPR000313 -
Eupl08g00307 1103 FunFam Histone-lysine N-methyltransferase 935 1103 - -
Eupl08g00307 1103 Pfam SET domain 972 1077 IPR001214 GO:0005515
Eupl08g00307 1103 FunFam Histone-lysine N-methyltransferase 722 841 - -
Eupl08g00307 1103 SUPERFAMILY SET domain 954 1099 IPR046341 -
Eupl08g00307 1103 ProSitePatterns Zinc finger PHD-type signature. 673 718 IPR019786 -
Eupl08g00307 1103 CDD PHD_TCF19_like 478 528 - -
Eupl08g00307 1103 ProSiteProfiles PWWP domain profile. 285 354 IPR000313 -
Eupl08g00307 1103 Pfam PHD-zinc-finger like domain 726 838 - -
Eupl08g00307 1103 CDD PWWP_AtATX3-like 284 388 - -
Eupl08g00307 1103 ProSiteProfiles Extended PHD (ePHD) domain profile. 724 839 IPR034732 -
Eupl08g00307 1103 CDD PHD_ATX3_4_5_like 672 718 IPR042011 -
Eupl08g00307 1103 ProSiteProfiles SET domain profile. 961 1078 IPR001214 GO:0005515
Eupl08g00307 1103 Pfam PHD-finger 477 530 IPR019787 -
Eupl08g00307 1103 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 723 841 IPR013083 -
Eupl08g00307 1103 Pfam PHD-finger 685 719 - -
Eupl08g00307 1103 CDD SET_SETD1-like 948 1099 - -
Eupl08g00307 1103 FunFam Histone-lysine N-methyltransferase 660 721 - -
Eupl08g00307 1103 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 472 533 IPR013083 -
Eupl08g00307 1103 SUPERFAMILY FYVE/PHD zinc finger 475 533 IPR011011 -
Eupl08g00307 1103 ProSiteProfiles Zinc finger PHD-type profile. 475 531 IPR019787 -
Eupl08g00307 1103 Gene3D - 279 385 - -
Eupl08g00307 1103 PANTHER PHD FINGER PROTEINS 15 528 - -
Eupl08g00307 1103 SUPERFAMILY Tudor/PWWP/MBT 277 383 - -
Eupl08g00307 1103 ProSiteProfiles Zinc finger PHD-type profile. 670 721 IPR019787 -
Eupl08g00307 1103 SMART set_7 961 1084 IPR001214 GO:0005515
Eupl08g00307 1103 CDD ePHD_ATX3_4_5_like 727 838 IPR041955 -
Eupl08g00307 1103 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 665 722 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00307 Eupl-Chr8 4910692 4929381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00307 673 838 C2H2 Transcription Factor Family AT3G14740 30.636 6.51e-19 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Eupl08g00307 zf-HC5HC2H_2 6.1e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00307 - - nnu:104604802 1847.02