Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00277 ATGGAACTGGAAGTAGACACCAATGGCTTATTGGAAGAATCTATTTTTGAAATTGATGGTGATATTGATGACACTGCTTTTGAGAATGAAAGATGTGGAATATGCATGGATATTATCATTGACAGGGGAGTTCTGGACTGCTGCCAGCACTGGTTCTGTTTTGCATGCATTGACAACTGGGCTACCATCACAAACCTCTGCCCGCTTTGCCAGAATGAATTTCAATTGATCACATGTGTTCCAGTGTATGATACGATTGGAAGCGGTAAGGCTGAGGATGACTCGCTCTCCAGAGATGATGATTGGAGCATTCAAGGGAAGAATAACACTCTCTCTTTTCCTTCATACTACATTGATGAAAATTTATCTGTTTGGATGGAGATGGCTGCAAGATACGAAGTGGACCGGCAACAACTGAGGAAGATTCAAATCTTGATACATCAATTGCTTGTGATTCATGTGATTTATGGTACCATGCTTTTTGTGTGGGATTTGATCCAGAAGGCACATCTGAGAATTCATGGTTATGCCCAAGGTGTGTAG 543 0.4144 MELEVDTNGLLEESIFEIDGDIDDTAFENERCGICMDIIIDRGVLDCCQHWFCFACIDNWATITNLCPLCQNEFQLITCVPVYDTIGSGKAEDDSLSRDDDWSIQGKNNTLSFPSYYIDENLSVWMEMAARYEVDRQQLRKIQILIHQLLVIHVIYGTMLFVWDLIQKAHLRIHGYAQGV* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00277 180 ProSitePatterns Zinc finger RING-type signature. 48 57 IPR017907 -
Eupl08g00277 180 Pfam Ring finger domain 31 71 IPR001841 -
Eupl08g00277 180 SUPERFAMILY RING/U-box 26 77 - -
Eupl08g00277 180 SMART ring_2 32 70 IPR001841 -
Eupl08g00277 180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 108 IPR013083 -
Eupl08g00277 180 ProSiteProfiles Zinc finger RING-type profile. 32 71 IPR001841 -
Eupl08g00277 180 PANTHER F18C1.6 PROTEIN 27 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00277 Eupl-Chr8 4387144 4390319 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00277 13 74 C3H Transcription Factor Family AT2G39100 33.846 1.91e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00277 - - rcu:8288033 271.166