Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Eupl08g00275 | ATGGAGTTGGATAGTATTGAATGCGTCTCGTCTTCGGACGGGATCGATGAGGAGGAGACCCATCATCATCAGTTTTCGTCGAAGCCCCATACCAATATCGTCTCCTCGGTTATTACTCCGGCCATCAGCGTTCATGAGCTGCTCGAATGCCCCGTCTGTACCAATTCAATGTACCCTCCAATCCATCAGTGCCACAATGGGCATACACTGTGTTCCACCTGTAAAACAAGGGTACACAATCGTTGCCCCACTTGTAGACAGGAGCTAGGAGATATCAGGTGTCTAGCATTGGAGAAGGTGGCAGAGTCGCTTGAACTGCCCTGCAAGTACTGTTCCTTGGGTTGCCCAGAGATCTTCCCCTACTACAGCAAGCTCAAGCATGAGGCTCAGTGTAATTTCAGACCATACAACTGCCCATATGCCGGATCAGAGTGCTCTGTTGTTGGGGATATCCCTTTCCTGGTTTCTCATCTGAGGGATGATCACAAGGTAGACATGCACACTGGATGCACGTTCAACCATCGATATGTGAAATCTAATCCCCGCGAGGTTGAAAATGCCACCTGGATGTTAACAGTCTTCAATTGCTTTGGTCAGTACTTCTGTTTGCACTTTGAAGCCTTCCAGCTTGGCATGGCCCCTGTCTACATGGCATTCCTCCGTTTCATGGGTGATGAGACTGAGGCCCGGAATTTCAGCTACAGCCTGGAGGTTGGGTTAAATGGCAGGAAGCTTATATGGGAAGGCACCCCTCGGAGCGTCCGTGATAGCCATCGGAAGGTCAGAGACAGCCACGACGGCCTCATAATCCAGCGTAACATGGCACTTTTCTTCTCTGGTGGGGACAGGAAGGAGCTGAAACTAAGGGTTACAGGGCGGATATGGAAGGAACAACAAAACCAGATTCCGGTGTGTGCATACCCAATCACTGTAGCTGAGGTGCAATAA | 948 | 0.5011 | MELDSIECVSSSDGIDEEETHHHQFSSKPHTNIVSSVITPAISVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYCSLGCPEIFPYYSKLKHEAQCNFRPYNCPYAGSECSVVGDIPFLVSHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFNCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNFSYSLEVGLNGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNQIPVCAYPITVAEVQ* | 316 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Eupl08g00275 | 315 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 31 | 297 | - | - | |
Eupl08g00275 | 315 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 157 | 291 | IPR008974 | GO:0005515 | |
Eupl08g00275 | 315 | CDD | RING-HC_SIAHs | 48 | 86 | - | - | |
Eupl08g00275 | 315 | SUPERFAMILY | RING/U-box | 42 | 89 | - | - | |
Eupl08g00275 | 315 | ProSiteProfiles | Zinc finger SIAH-type profile. | 103 | 163 | IPR013010 | GO:0008270 | |
Eupl08g00275 | 315 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 100 | 158 | - | - | |
Eupl08g00275 | 315 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 44 | 92 | IPR013083 | - | |
Eupl08g00275 | 315 | CDD | Sina | 164 | 292 | - | - | |
Eupl08g00275 | 315 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Eupl08g00275 | 315 | Pfam | Seven in absentia protein family | 92 | 291 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
Eupl08g00275 | 315 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 98 | 156 | IPR013083 | - | |
Eupl08g00275 | 315 | ProSiteProfiles | Zinc finger RING-type profile. | 50 | 86 | IPR001841 | - | |
Eupl08g00275 | 315 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 159 | 291 | - | - | |
Eupl08g00275 | 315 | SUPERFAMILY | TRAF domain-like | 103 | 295 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Eupl08g00275 | Eupl-Chr8 | 4372087 | 4379914 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Eupl08g00275 | 10 | 298 | C3H Transcription Factor Family | AT2G41980 | 74.658 | 2.66e-164 | 457 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Eupl08g00275 | K04506 | - | nnu:104604027 | 627.476 |