Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00275 ATGGAGTTGGATAGTATTGAATGCGTCTCGTCTTCGGACGGGATCGATGAGGAGGAGACCCATCATCATCAGTTTTCGTCGAAGCCCCATACCAATATCGTCTCCTCGGTTATTACTCCGGCCATCAGCGTTCATGAGCTGCTCGAATGCCCCGTCTGTACCAATTCAATGTACCCTCCAATCCATCAGTGCCACAATGGGCATACACTGTGTTCCACCTGTAAAACAAGGGTACACAATCGTTGCCCCACTTGTAGACAGGAGCTAGGAGATATCAGGTGTCTAGCATTGGAGAAGGTGGCAGAGTCGCTTGAACTGCCCTGCAAGTACTGTTCCTTGGGTTGCCCAGAGATCTTCCCCTACTACAGCAAGCTCAAGCATGAGGCTCAGTGTAATTTCAGACCATACAACTGCCCATATGCCGGATCAGAGTGCTCTGTTGTTGGGGATATCCCTTTCCTGGTTTCTCATCTGAGGGATGATCACAAGGTAGACATGCACACTGGATGCACGTTCAACCATCGATATGTGAAATCTAATCCCCGCGAGGTTGAAAATGCCACCTGGATGTTAACAGTCTTCAATTGCTTTGGTCAGTACTTCTGTTTGCACTTTGAAGCCTTCCAGCTTGGCATGGCCCCTGTCTACATGGCATTCCTCCGTTTCATGGGTGATGAGACTGAGGCCCGGAATTTCAGCTACAGCCTGGAGGTTGGGTTAAATGGCAGGAAGCTTATATGGGAAGGCACCCCTCGGAGCGTCCGTGATAGCCATCGGAAGGTCAGAGACAGCCACGACGGCCTCATAATCCAGCGTAACATGGCACTTTTCTTCTCTGGTGGGGACAGGAAGGAGCTGAAACTAAGGGTTACAGGGCGGATATGGAAGGAACAACAAAACCAGATTCCGGTGTGTGCATACCCAATCACTGTAGCTGAGGTGCAATAA 948 0.5011 MELDSIECVSSSDGIDEEETHHHQFSSKPHTNIVSSVITPAISVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYCSLGCPEIFPYYSKLKHEAQCNFRPYNCPYAGSECSVVGDIPFLVSHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFNCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNFSYSLEVGLNGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNQIPVCAYPITVAEVQ* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00275 315 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 31 297 - -
Eupl08g00275 315 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 157 291 IPR008974 GO:0005515
Eupl08g00275 315 CDD RING-HC_SIAHs 48 86 - -
Eupl08g00275 315 SUPERFAMILY RING/U-box 42 89 - -
Eupl08g00275 315 ProSiteProfiles Zinc finger SIAH-type profile. 103 163 IPR013010 GO:0008270
Eupl08g00275 315 FunFam E3 ubiquitin-protein ligase SINAT3 100 158 - -
Eupl08g00275 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 92 IPR013083 -
Eupl08g00275 315 CDD Sina 164 292 - -
Eupl08g00275 315 MobiDBLite consensus disorder prediction 1 26 - -
Eupl08g00275 315 Pfam Seven in absentia protein family 92 291 IPR018121 GO:0005737|GO:0006511|GO:0007275
Eupl08g00275 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 156 IPR013083 -
Eupl08g00275 315 ProSiteProfiles Zinc finger RING-type profile. 50 86 IPR001841 -
Eupl08g00275 315 FunFam E3 ubiquitin-protein ligase SINAT5-like 159 291 - -
Eupl08g00275 315 SUPERFAMILY TRAF domain-like 103 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00275 Eupl-Chr8 4372087 4379914 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00275 10 298 C3H Transcription Factor Family AT2G41980 74.658 2.66e-164 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00275 K04506 - nnu:104604027 627.476