Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00265 ATGAAGACAGAGACGGGATTTGGAAGTGGGTTTTGGAATAATGAAGATAAGGCCATGGTTGCGGCAGTTTTGGGTGCACGGGCTTTTGATTACTTGATCACGAGCACAGTGTCTTCGGAAGGCTTGTTAACAGCGGTTGGGAGCGATGATAACCTGCAAAACAAACTTTCGGAGCTCGTCGAGAGCCCGAACGCCTCGAATTTTAGCTGGAATTATGCGATCTTTTGGCAGATTTCGAGGTCGAAATCTGGGGATTTGGTTTTGGGCTGGGGTGATGGGTATTGCAGGGAACCGAAGGAAGGGGAAGAATCCGAAGCTACCCGGCTTCTAAATCTCCGGCTTGAGGATGAAACCCAACAGAAGATGAGGAAGAGAGTTCTTCAGAAGCTCCACACGTTCTTTGGAGGATCGGAGGAGGAGAACTATGCGCCCGGGTTGGATCGAGTCACAGACACAGAAATGTTCTTCCTTGCATCCATGTACTTCTCCTTCCCGCGGGGCGAAGGTGCCCCTGGAAAGGCTTTTGGATCGGGGAAACACATATGGCTCTCGGAAGCCCTGAAATCGCCATCTGAGTACTGTGTCCGATCGTTCCTTGCCCGTTCTGCAGGGTTCCAGACCTTCGTTCTCATCCCCACCGATACTGGGGTTGTCGAATTAGGTTCCGTGCGATCCATACCCGAGAGTTTAGAGGTGTTGATGACAATAAGGTCTACATTCTCGTCCGCTTCTTCACCCATCCGGGTCAAGCCGGCAACAGCCATGGCGGTAATGAATGAGAAGAAAGGTGAAAGTGGTGGTCTCTCTAGTTTGGGGTTCGGGGAGCGGCAAGACGAACACCCCAAGATTTTTGGGCAGGATCTGAACCCTGGTCGATCTCAGCTTAACGAGAAGCTTATTGTTGCTAAGGTGGAGGAGAGGCCCTGGGAGGCATACCCAAATGGGAATAGGCTTCCATTTCCAAACAATCGAAGGGGCCTTCATGGTTTGAATTGGCCACAGATCCATGGAGTAAAATCAGGGACAAATTCAGAGGTTTATAGTTCTCAAACCCCAGTGAATAATCAACAGAAGTTCGGTAATACTATTGTCGTGATCAGCAACGACGTAGACCCTGCACATCGATCCTTTGGTCACAATAATGGGGTCAGGGAGGACCTTCGGCTGAACCAATTTCAGCCACAGAAGCAGCTGCAAAGGCAAATTGATTTCACTGGGGGAGCAACTTCAAGGGCCTCTGTTATCGCCCGGCCAACTATTCTTGAGTCTGAGCATTCGGATGTCGAAGCATCATGCAAGGATGACCGGTCTGCCCCCACCGACGACCGGAGGCCAAGGAAGCGTGGTCGGAAGCCTGCAAATGGAAGGGAAGAGCCTCTTAACCATGTTGAGGCAGAGCGGCAGCGTCGAGAGAAACTTAACCAGCGGTTTTATGCATTAAGAGCTGTGGTGCCCAACATCTCGAAGATGGACAAAGCTTCCTTGCTCGGAGATGCCATAACCTACATCACCGAGCTTCAGAAAAAGCTCAAGGACATGGAGTCAGAGAGAGAGAAGCTTGGGAACCCGTCGAGAGACACAGTGGCTTCTGAGGCCAATTCAGCAGCAGAGAATCGGAAGCAAACCCCAGACATTGACATTCAAGCCATACATGACGAGGTTATCGTACGTGTGAGCTCCCCGTTGGAGACTCATCCCATATCGAGAGTCATTCAAGCATTCAAAGAGGCACAGATCACTGTGGTGGAGTCGAAGATCTCTGCAGGCAATGATGCTGTGTTCCACACATTTGTGATCAAGTCTCAAGGATCTGAGCAGCTGACGAAGGACAAGTTGATCGCCGCATTTTCTCACGAGTCCAACACCTTGTAG 1872 0.5064 MKTETGFGSGFWNNEDKAMVAAVLGARAFDYLITSTVSSEGLLTAVGSDDNLQNKLSELVESPNASNFSWNYAIFWQISRSKSGDLVLGWGDGYCREPKEGEESEATRLLNLRLEDETQQKMRKRVLQKLHTFFGGSEEENYAPGLDRVTDTEMFFLASMYFSFPRGEGAPGKAFGSGKHIWLSEALKSPSEYCVRSFLARSAGFQTFVLIPTDTGVVELGSVRSIPESLEVLMTIRSTFSSASSPIRVKPATAMAVMNEKKGESGGLSSLGFGERQDEHPKIFGQDLNPGRSQLNEKLIVAKVEERPWEAYPNGNRLPFPNNRRGLHGLNWPQIHGVKSGTNSEVYSSQTPVNNQQKFGNTIVVISNDVDPAHRSFGHNNGVREDLRLNQFQPQKQLQRQIDFTGGATSRASVIARPTILESEHSDVEASCKDDRSAPTDDRRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYITELQKKLKDMESEREKLGNPSRDTVASEANSAAENRKQTPDIDIQAIHDEVIVRVSSPLETHPISRVIQAFKEAQITVVESKISAGNDAVFHTFVIKSQGSEQLTKDKLIAAFSHESNTL* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00265 623 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 240 IPR025610 -
Eupl08g00265 623 Gene3D - 450 522 IPR036638 GO:0046983
Eupl08g00265 623 SMART finulus 463 512 IPR011598 GO:0046983
Eupl08g00265 623 CDD bHLH_AtAIB_like 454 526 - -
Eupl08g00265 623 MobiDBLite consensus disorder prediction 526 540 - -
Eupl08g00265 623 MobiDBLite consensus disorder prediction 514 540 - -
Eupl08g00265 623 PANTHER MYC 29 615 IPR045084 GO:0003700|GO:0006355
Eupl08g00265 623 FunFam Transcription factor bHLH13 450 523 - -
Eupl08g00265 623 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 460 522 IPR036638 GO:0046983
Eupl08g00265 623 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 457 506 IPR011598 GO:0046983
Eupl08g00265 623 Pfam Helix-loop-helix DNA-binding domain 461 507 IPR011598 GO:0046983
Eupl08g00265 623 MobiDBLite consensus disorder prediction 423 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00265 Eupl-Chr8 4153785 4158603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00265 7 619 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 50.155 0.0 566
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl08g00265 bHLH-MYC_N 1.2e-55 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00265 - - ming:122082446 950.273