Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00259 ATGGAGAAACCACCACCATACACAGAAGATCTTACAACACCGCCGGATACCACCGGAGAAACACGTCGGAAATCTGACGTCGTAGTAGTAGGAGGAGGAGGTACGAGGCACCCAGTATATAGAGGAGTAAGAAAAAGGCGGTGGGGAAAATGGGTGTCGGAAATACGGGAGCCGAGAAAGAAGTCGAGAATATGGCTTGGCTCGTTCCCGACGCCGGAGATGGCTGCTAGGGCTTACGATGTAGCTGCATATTGTCTCAAAGGACATAAAGCTCTACTGAATTTCCCTGAAGAAGCTGAACTCCTACCTCTGCCGTCCACGTGTACGGCCAGAGATATTCAGGCAGCGGCAGCCTCAGCTGCGAAGGCTGTGATGTCGGAGAAGAAGATGGAGAAATCGGACGGTGATGTTGGAGATGATTTCTGGGGTGAGATTGAGTTGCCGGAGCTGATGAGCGACGGGAGAGAGATTTGGTCGGAGACGGTGATGGAGCATTTGCCGGAGTTATGTTATCGGAATTCTTGTAACTGGACCTGTTCTAGCGATGACACGTGGCTACTGTAA 564 0.5142 MEKPPPYTEDLTTPPDTTGETRRKSDVVVVGGGGTRHPVYRGVRKRRWGKWVSEIREPRKKSRIWLGSFPTPEMAARAYDVAAYCLKGHKALLNFPEEAELLPLPSTCTARDIQAAAASAAKAVMSEKKMEKSDGDVGDDFWGEIELPELMSDGREIWSETVMEHLPELCYRNSCNWTCSSDDTWLL* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00259 187 Pfam AP2 domain 38 89 IPR001471 GO:0003700|GO:0006355
Eupl08g00259 187 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Eupl08g00259 187 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Eupl08g00259 187 MobiDBLite consensus disorder prediction 1 31 - -
Eupl08g00259 187 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 23 133 - -
Eupl08g00259 187 SUPERFAMILY DNA-binding domain 39 97 IPR016177 GO:0003677
Eupl08g00259 187 Gene3D AP2/ERF domain 39 98 IPR036955 GO:0003700|GO:0006355
Eupl08g00259 187 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Eupl08g00259 187 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Eupl08g00259 187 FunFam Ethylene-responsive transcription factor 2 38 97 - -
Eupl08g00259 187 CDD AP2 40 97 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00259 Eupl-Chr8 4073223 4074400 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00259 6 154 AP2-EREBP Transcription Factor Family AT1G01250 63.522 1.12e-56 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Eupl08g00259 AP2 2.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00259 K09286 - nnu:104604770 260.766