Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00253 ATGGCGTATGGAGATAATTTCAGAGGTTCGTCGATTTCGCAGCAGAATTTCTCTGCGGAAAGGCCGGAAACAGGCGAAGATCTCTATTCGGAGCTATGGAGAGCTTGTGCGGGTCCTCTCGTTGATGTTCCTCGGCAGGGAGAGAGGGTTTTCTACTTCCCTCAAGGTCACATGGAGCAATTAGAAGCTTCAACTAACCAGGAATTGAATCAGAGTATTCCTTTATTTAATCTTCCTACGAAGATCCTTTGTCGTGTTGTTCACATTCACTTACTGGCTGAACAAGAATCAGACGAAGTTTATGCACAAATTACCTTACTACCAGAACAAGATCAAAGTGAGCCTAAGAGTCCTGATCCATGTCAACTGGAATCTTCAAGACCGACTGTTCATTCTTTCTGCAAGATTTTAACTGCCTCTGATACAAGCACCCATGGCGGGTTCTCTGTTCTTCGGAAACATGCGAATGAATGCCTCCCACAGTTGGACATGACCCAACCAACCCCAACTCAGGAATTGGCCGCGAAGGATCTTCATGGGTACGAGTGGCGATTTAAGCATATCTTCAGAGGTCAACCCCGGAGGCATTTGCTTACAACAGGTTGGAGTACGTTCGTCACTTCTAAGAGATTGGCTGCAGGGGATGCCTTTGTTTTTTTGAGGGGGGAGAATGGAGAATTACGTGTAGGAGTTAGACGTCATGTTCGTCAACAAAGCAGCATGCCATCATCTGTGATATCCAGCCATAGCATGCATCTCGGAGTCCTTGCTACAGCTTCTCATGCTGTTTCAACCCAAACCCTCTTCATTGTTTATTACAAGCCAAGGACGAGTCAATTCATAATAAGTTTGAACAAGTATTTGGAGGCTGTTAATAACGGCTTTTCAGTGGGGATGCGATACAAGATGAGATTTGAAGGGGAAGATTCTCCGGAGAGAAGGTTTACAGGCACGATAGTTGGGGTTGGAGACATTTGTCCCCAGTGGATAGATTCCAAATGGAGATCTTTGAAGGTCCATTGGGATGAACCTGCTTCCATTCAAAGACCAGAGAGAGTTTCTCCCTGGGAGATAGAGCCTTGTGTTGCGTCCGCACCTTCTTCAAACCTGTCTCAACCAGCAGTGATAAAGAAACGATCCCGACCATCAATTGAACTACCAGTCTTGGAAACTACTACTAGTTCTGCAGCATCTGCTTTCTGGTATCCTGTATCAACCCCATCCCATGACCTAACTGCATTGGGTGGTCCTGAAGTCCAGAGCAGTGAAAGCCAAGTTGTCTGGCTTCCTAAGCAGAAAGAAATTAAGGCAATATCATCAACAGCAGCAGCAGCTGTAGCTCAAGGACCCGGCTGGAGCGGGGATGGCCTTCCCCACTTGGGAATGTTTCTCTGA 1395 0.4652 MAYGDNFRGSSISQQNFSAERPETGEDLYSELWRACAGPLVDVPRQGERVFYFPQGHMEQLEASTNQELNQSIPLFNLPTKILCRVVHIHLLAEQESDEVYAQITLLPEQDQSEPKSPDPCQLESSRPTVHSFCKILTASDTSTHGGFSVLRKHANECLPQLDMTQPTPTQELAAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLAAGDAFVFLRGENGELRVGVRRHVRQQSSMPSSVISSHSMHLGVLATASHAVSTQTLFIVYYKPRTSQFIISLNKYLEAVNNGFSVGMRYKMRFEGEDSPERRFTGTIVGVGDICPQWIDSKWRSLKVHWDEPASIQRPERVSPWEIEPCVASAPSSNLSQPAVIKKRSRPSIELPVLETTTSSAASAFWYPVSTPSHDLTALGGPEVQSSESQVVWLPKQKEIKAISSTAAAAVAQGPGWSGDGLPHLGMFL* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00253 464 CDD B3_DNA 131 233 IPR003340 GO:0003677
Eupl08g00253 464 FunFam Auxin response factor 294 365 - -
Eupl08g00253 464 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 27 394 IPR044835 GO:0003677|GO:0006355|GO:0009725
Eupl08g00253 464 Gene3D - 294 366 - -
Eupl08g00253 464 ProSiteProfiles B3 DNA-binding domain profile. 133 235 IPR003340 GO:0003677
Eupl08g00253 464 Pfam Auxin response factor 259 338 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Eupl08g00253 464 Pfam B3 DNA binding domain 133 234 IPR003340 GO:0003677
Eupl08g00253 464 MobiDBLite consensus disorder prediction 7 21 - -
Eupl08g00253 464 FunFam Auxin response factor 131 235 - -
Eupl08g00253 464 SUPERFAMILY DNA-binding pseudobarrel domain 123 262 IPR015300 -
Eupl08g00253 464 Gene3D - 130 235 IPR015300 -
Eupl08g00253 464 MobiDBLite consensus disorder prediction 1 23 - -
Eupl08g00253 464 SMART B3_2 133 235 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00253 Eupl-Chr8 3998424 4001059 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00253 26 386 B3 DNA Binding Superfamily AT2G46530 74.586 0.0 570
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Eupl08g00253 B3 1.1e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00253 K14486 - nnu:104604041 711.449