Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00252 ATGCATGACCACCCAGTGGAAAAGGCGAAGAAACCTGAGACGCCGGGTGGGTACAGGTTGTTTGGAATTGAGTTGATCAATAACTCAAATACCCCCGCTCCTGCAGAGAAGGCACGGGTACATCTGATAAGCATATCTAGTGCCACCACTGAAGCGACTGCCCTGGCTACTGATTCAGAACAACAGTCGGGTCTTTCAAAGGCCTCCAAAGAACAGAAACAAGGTTTATTACAGGTCTCACCGAGAGATAAGAGCTGCTCTACTTCTACTAGAAGTCGCACTAAGGTGCACATGCAAGGGATCGCGGTTGGTCGGGCTGTGGATCTGACTATTTTGGAAGGGTACGAAGAGCTTATAAATGAGCTAGAGGAGATGTTTGAGATCAGAGGGGAACTTTGCCCGCGGAATAAATGGGAAGTAGTCTTCACCGATGACGAAGGGGATATGATGCTTGTGGGCGACGATCCATGGCCGGAATTTTGTAAGATGGTCAGGAAGATATTCATCTATTCAAGCCAGGAAGTCAAGAAGATGAATCCAAGAAGCAAGCTTCCTGCATCATCTATGGAGGGTGAAGGGACTGTTGTAAGCTTGGACTCAGAACTAAAAGCTGAAACATGA 621 0.475 MHDHPVEKAKKPETPGGYRLFGIELINNSNTPAPAEKARVHLISISSATTEATALATDSEQQSGLSKASKEQKQGLLQVSPRDKSCSTSTRSRTKVHMQGIAVGRAVDLTILEGYEELINELEEMFEIRGELCPRNKWEVVFTDDEGDMMLVGDDPWPEFCKMVRKIFIYSSQEVKKMNPRSKLPASSMEGEGTVVSLDSELKAET* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00252 206 MobiDBLite consensus disorder prediction 54 92 - -
Eupl08g00252 206 FunFam Auxin response factor 86 179 - -
Eupl08g00252 206 SUPERFAMILY CAD & PB1 domains 87 167 - -
Eupl08g00252 206 MobiDBLite consensus disorder prediction 180 206 - -
Eupl08g00252 206 Gene3D - 86 179 - -
Eupl08g00252 206 Pfam AUX/IAA family 73 127 IPR033389 -
Eupl08g00252 206 Pfam AUX/IAA family 137 181 IPR033389 -
Eupl08g00252 206 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 179 IPR044835 GO:0003677|GO:0006355|GO:0009725
Eupl08g00252 206 ProSiteProfiles PB1 domain profile. 91 183 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00252 Eupl-Chr8 3997485 3998319 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00252 5 184 B3 DNA Binding Superfamily AT4G23980 56.284 2.26e-59 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Eupl08g00252 AUX_IAA 1.4e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00252 K14486 - psom:113321798 252.292