Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00245 ATGGGTCTTCCTCAAACTCCAAACCCTCCTCATCTCTATCCCCAAGCTCTTCAGCTCAAACTCTACCAAGCCTTCATCTTTTCAGTCCCAATCCTCTTCTCTATCATTCTTTTGCTCTTGTTTTACCTTTTTTATCTCAAGAGAAGGAGAGACTCCAATCTCTCCCCACCTGCAACTCTTCCAAGGAGATTCAATCATCCCACTCCACTTGTCTCTCTGCCTTATGATGTGGGCTTGAAGGAGGATCTCAAAGAAAAGCTTCCCATAATTATGTTTGATGAGGATTTAAGGGCAAGGGATTCACAATGTTGTGTGTGCCTGGGAGAATTTGAGGTCAAGGAGCAGTTGCATCAGATCCCAGCATGCAAGCATGTGTTTCATATTGAATGTATTCATTACTGGCTCCATGCAAACACGACATGCCCGCTATGCCGTTGCTCCGTTAGTCCGACTAGAAAACCTAATTCGGAGCCTCCCGTTCAATTCAACTCATTCTGGCCAAACGACGCAAACTCCGACCAAAATCCACATCATGGATCTCCCGAGAATGTAGTAGGCATGGTTTCAAATGAAGTGCAATCGACTCAAATCGAAGGCTCGAGTAGCGGGAGGACATGTTTAACTGACGACTCAAGCGATTCACAACCGACATCCGTTCCGATGGACAATGGAATGGATTTTTCCCGTCAAAACTCGGTCATTATCCAAATCCAGATGCATAATTCATGA 729 0.4513 MGLPQTPNPPHLYPQALQLKLYQAFIFSVPILFSIILLLLFYLFYLKRRRDSNLSPPATLPRRFNHPTPLVSLPYDVGLKEDLKEKLPIIMFDEDLRARDSQCCVCLGEFEVKEQLHQIPACKHVFHIECIHYWLHANTTCPLCRCSVSPTRKPNSEPPVQFNSFWPNDANSDQNPHHGSPENVVGMVSNEVQSTQIEGSSSGRTCLTDDSSDSQPTSVPMDNGMDFSRQNSVIIQIQMHNS* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00245 242 MobiDBLite consensus disorder prediction 157 179 - -
Eupl08g00245 242 CDD RING-H2_EL5-like 102 145 - -
Eupl08g00245 242 MobiDBLite consensus disorder prediction 157 184 - -
Eupl08g00245 242 PANTHER RING-H2 FINGER PROTEIN ATL16 20 206 IPR044600 GO:0016567|GO:0016740
Eupl08g00245 242 SMART ring_2 103 144 IPR001841 -
Eupl08g00245 242 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Eupl08g00245 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 151 IPR013083 -
Eupl08g00245 242 SUPERFAMILY RING/U-box 85 152 - -
Eupl08g00245 242 Pfam Ring finger domain 102 145 IPR001841 -
Eupl08g00245 242 MobiDBLite consensus disorder prediction 197 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00245 Eupl-Chr8 3948158 3951247 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00245 3 150 C3H Transcription Factor Family AT4G10150 42.953 7.04e-41 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00245 K19039 - ming:122076156 239.195