Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00236 ATGTCTGAACCAGAAGAAGAAAATCCGACAACCTCCGCTTCGAAGTCGACTCAACCAATGGTCGAGAGAGACTGCCTCATGGATCTTGATCTCGATCTCGACTCCTTATGGCCGTTTGATCAGAATCCCATTGCTTCCAATCCTGCTTCTCCCCTTCTTCTCTCCATCTTTGCTTCACCCCCTCAAAACCCTCCTCATCCCTCGTCCTCCGAACTTCCCTTTTCTCCTCTTTGGGTTTTCTCAGATGGAGATGAGGAGAAATCTGGCGGGAACGCGAACTCCTCGTTCGCCGGAGGTCTTCGTCTCGCCGACTGCTCTAGATTTCTCTCCTGTAATCCTGATTCTGTAATCGGAAACCTTGTTGGGAACGAGGATAAACAAGGGTTCCTTCCACCAGTTGTGGGGGGGCTGGCGTCTATGGAGAATCCAGATGGGTCTTGTATGATCAAAGAGAGGATGATGCAGGCACTTCGGTACATCAAGGAATCAACGGAACAACACGTCCTGGCCCAGGTTTGGGCACCCATTAAGAATGGGGATCGATATGTACTAACAACTTCCGGGCAACCCTTTGTTCTCAATCCACATAGTAACGGACTTCTTCAATATAGAACAGTCTCTCTGATGTATATGTTTTCTGTGGACGGAGAGAGTGACGGAGACTTGGGGCTTCCTGGCCGCGTTTTTCGGCAAAAACTGCCAGAATGGACTCCAAATGTGCAGTATTACAGCAGCAAAGAGTATCCACGGCTTACTCATGCTTTGCATTACAATGTTCGGGGAAGCTTGGCTTTGCCAGTCTTTGAACGTACTGGGCAGTCCTGTGTTGGTGTGGTTGAGCTTATAATGACGTCGCAGAAGATTAACTATGCTCCTGAGGTTGATAAAGTCTGCAAAGCTCTTGAGGCAGTAAATCTGAAAAGTTCTGAGATACTGGATCATCCAAATATGCAGATTTGCAATGAAGGTCGTCAAAATGCCCTGGCTGAAATCTTGGAGATATTAACCATGGTATGTGAGAACCACAAGTTGCCTTTTGCTCAGACCTGGGTTCCATGCAGACATCGCAGTGTTCTTGCCTATGGTGGTGGTTTGAAGAAGAGCTGCTCAAGCTTTGATGGAAGCTGTATGGGGCAAGTCTGCATGTCCACAACCGATGTAGCATTCTATGTTGTAGATGCTCATATCTGGGGTTTTCGGGATGCCTGCGCGGAGCATCACTTGCAAAAGGGACAAGGGGTGGCTGGGAGGGCATTTTCATCTCATAGGTCATGTTTCTCCAGAGATATCACCCAGTTCAGCAAAACTGAGTACCCCTTGGTACACTATGCACGCATGTTCGGGTTACTCAGCTGCTTTGCCATTTGTTTGCGGAGCACTCACACAGGGAGTGATGATTATATTTTAGAGTTCTTTCTGCCACCTAGCATCACGGACTGTAGTGAACAACAGGCCTTGTTGGATTCCCTCTTGGCCACAATGAAGCAGCATTCCGGGAGTCTAAAGGTTGCTTCTGGAAGAGAACTGGAAGAAGAGGAAAGATCTGTTGAAATTATCGAAACAACTTTGGACGAAAAACTTGATTCGAAACTTGAATCCATTCGAATATCCCCCGGGACTGAATTGCTTCCAGGGCCTGATGACTTACCAAACGGGGGAGACATGATGCAACCGGATTCAATGGAGCAGCAGTTCATGGTGGAAAGTGATGCTCCAAAGAATGAAAAGAATCTTGTTAGTGTGGATGGAAGCCATGCTGCTATTTCTTTGTCTGACAATAAAAGCATGAGAAAAACATCGGAGAGAAGGCGGGGCAAAACTGAGAAGTCTATAAGTTTAGAGGTTCTCCAACAATATTTTGCTGGGAGTCTTAAGGATGCTGCAAAGAGTCTCGGAGTTTGCCCGACTACCATGAAACGCATTTGTAGACAGCACGGTATTTCCAGGTGGCCATCACGCAAGATCAACAAGGTAAATCGTTCTCTCTCCAAGCTGAAGCGTGTGATTGAATCTGTACAAGGCGGTGAAGGAGCATTTAGTCTGACTTCTCTTGCAACAAGTCCTCTCCCTGTTACCGTCGGTTCCATTTCTTGGCCTGTCTGCTTGAATGGACCCAAAGAACAACACTTGCCAGGCTCTAAGCACTCTGAAGAGCGAAAGGAGATGGAATCACCAAACCATAAGACTCCAGAAAGTGATGGGCATGGTAACACAGGGAACCAAATACTTGAAGGAGACATCTTGTTAGCTCATCAGGAACTTCATGAGCAAACTGGGTCCCCACTGGAGTTTGGTAAGGGCTCAAAAACAAGAAGTGGTTCAGCGGATGAGAGCACGGGAACCCCTACATCTCATGGTTCATGCCAAGGTAGCCCTGCAAATGAAACCACCCCCATAGATGATCTGTTTGTTTCTTCCATCCAAGAACAAGGTGTAAATATTGGAGGTTCCCTGGGTTTGGCGTTTCAGCCAAACGGAGAACTAAATTTATCTGCTGCCTACTCAATCCCTGATGCTCTTATAACAACACAACTGCAACCACCATTGGGTGGCATGTTAATTGAGGACTCTGGAAGCTCAAAAGATTTGATAAACCTTTGTAACTTGGCAGCAGAGGGTTGTTTAGATGAGCGGGTTCCAGAATCTAGTTGGACAAACCCTCCCTGTCCTGATCAAGCTCTTCGGCAAGTCATGCCTCCTCCTACTTATACAATGCCACATGTTACAGCTACCCAAGATGTGAGAACTGTGACCATAAAGGCGACTTATAGAGAAGATATTATAAGGTTTCGGCTCCCGTTGACTTCTGGTGTGTTTGAGTTGAAGGAAGAAGTGGCAAAGAGGCTCAAGTTGGAGGTGGGTACATTTGATATCAAATATCTGGATGACGATCACGAGTGGGTCTTACTAGCCTGCGATGCGGACTTGCAGGAGTGTATGGACATCTCGAGATTGTCGGGCAGGCACGTAATCAGACTGCAGGTGCATGACATAATGGGCAACTTTGGGAGCTCCTGTGAGAGCTCAGGAGAGTGA 3036 0.471 MSEPEEENPTTSASKSTQPMVERDCLMDLDLDLDSLWPFDQNPIASNPASPLLLSIFASPPQNPPHPSSSELPFSPLWVFSDGDEEKSGGNANSSFAGGLRLADCSRFLSCNPDSVIGNLVGNEDKQGFLPPVVGGLASMENPDGSCMIKERMMQALRYIKESTEQHVLAQVWAPIKNGDRYVLTTSGQPFVLNPHSNGLLQYRTVSLMYMFSVDGESDGDLGLPGRVFRQKLPEWTPNVQYYSSKEYPRLTHALHYNVRGSLALPVFERTGQSCVGVVELIMTSQKINYAPEVDKVCKALEAVNLKSSEILDHPNMQICNEGRQNALAEILEILTMVCENHKLPFAQTWVPCRHRSVLAYGGGLKKSCSSFDGSCMGQVCMSTTDVAFYVVDAHIWGFRDACAEHHLQKGQGVAGRAFSSHRSCFSRDITQFSKTEYPLVHYARMFGLLSCFAICLRSTHTGSDDYILEFFLPPSITDCSEQQALLDSLLATMKQHSGSLKVASGRELEEEERSVEIIETTLDEKLDSKLESIRISPGTELLPGPDDLPNGGDMMQPDSMEQQFMVESDAPKNEKNLVSVDGSHAAISLSDNKSMRKTSERRRGKTEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGGEGAFSLTSLATSPLPVTVGSISWPVCLNGPKEQHLPGSKHSEERKEMESPNHKTPESDGHGNTGNQILEGDILLAHQELHEQTGSPLEFGKGSKTRSGSADESTGTPTSHGSCQGSPANETTPIDDLFVSSIQEQGVNIGGSLGLAFQPNGELNLSAAYSIPDALITTQLQPPLGGMLIEDSGSSKDLINLCNLAAEGCLDERVPESSWTNPPCPDQALRQVMPPPTYTMPHVTATQDVRTVTIKATYREDIIRFRLPLTSGVFELKEEVAKRLKLEVGTFDIKYLDDDHEWVLLACDADLQECMDISRLSGRHVIRLQVHDIMGNFGSSCESSGE* 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00236 1011 Pfam PB1 domain 916 997 IPR000270 GO:0005515
Eupl08g00236 1011 MobiDBLite consensus disorder prediction 763 798 - -
Eupl08g00236 1011 ProSiteProfiles PB1 domain profile. 916 998 IPR000270 GO:0005515
Eupl08g00236 1011 MobiDBLite consensus disorder prediction 1 19 - -
Eupl08g00236 1011 Pfam RWP-RK domain 610 658 IPR003035 -
Eupl08g00236 1011 SUPERFAMILY CAD & PB1 domains 912 1001 - -
Eupl08g00236 1011 SMART PB1_new 916 998 IPR000270 GO:0005515
Eupl08g00236 1011 CDD PB1_NLP 917 997 IPR034891 -
Eupl08g00236 1011 ProSiteProfiles RWP-RK domain profile. 597 678 IPR003035 -
Eupl08g00236 1011 MobiDBLite consensus disorder prediction 758 798 - -
Eupl08g00236 1011 Gene3D - 913 999 - -
Eupl08g00236 1011 PANTHER PROTEIN NLP8 69 1010 IPR045012 GO:0003700
Eupl08g00236 1011 MobiDBLite consensus disorder prediction 703 741 - -
Eupl08g00236 1011 MobiDBLite consensus disorder prediction 710 730 - -
Eupl08g00236 1011 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00236 Eupl-Chr8 3812613 3834256 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00236 200 1011 NLP Transcription Factor Family AT1G64530 53.931 0.0 803
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Eupl08g00236 PB1 3e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00236 - - nnu:104604749 1389.4