Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00235 ATGGATTTGCAAATTCAAGCACGAGTGAAGATCAATCAACCATGTGCTGCATGTCGAATGCTTCGCCGGAGATGCGGCGTTAACTGTCAATTAGCACCGTACTTTCCGGCTGACGAAGTCGAGAACTTTGCAGGTGTACACAAAGTGTTTGGTGCTAGCAATCTTATCAAAATGCTTCAGATGGTGGAGGAAAGCAAGAGGGGGGATGCTGTGAAGAGCATAGTCTATGAAGCGAGAGCAAGAGTAGAAGACCCCGTTTATGGAAGTGCAGGTTCCATTTTCTACTTGCAGAAGCACCTTGAAGATCTAAAGGCACAATTGGAGCTGACAAGAGCTAGAATTCTGGAGTCGGAAGAAGAAAGAAACCAGCTTCTAAGGGTTCTAATGGATGTTCACAGCTTCCGTCCAATATCACCCATTGATGATGCAATGTTTGACTGTTGTGATCTCTTGTTAGACGAGAGAACGATGGGCTACGACCCTGTTGAATTTCCAATAGATTCTGACTGGATGCTTTCATAA 522 0.4483 MDLQIQARVKINQPCAACRMLRRRCGVNCQLAPYFPADEVENFAGVHKVFGASNLIKMLQMVEESKRGDAVKSIVYEARARVEDPVYGSAGSIFYLQKHLEDLKAQLELTRARILESEEERNQLLRVLMDVHSFRPISPIDDAMFDCCDLLLDERTMGYDPVEFPIDSDWMLS* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00235 173 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 120 - -
Eupl08g00235 173 Coils Coil 100 120 - -
Eupl08g00235 173 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
Eupl08g00235 173 Pfam Lateral organ boundaries (LOB) domain 14 111 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00235 Eupl-Chr8 3805630 3807026 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00235 14 131 AS2 family AT1G07900 50.000 6.40e-40 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Eupl08g00235 LOB 2.3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00235 - - ming:122061636 247.669