Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00209 ATGGTTGCTGCAACAGCCCTCAGAAGGAGAAGAACCCAAGCCCCAAACCCTCTCTCCCATCTCACCCATGAAGGCCAAGGAGATTACAGTAACGCCTACTGCGAGCAATGTCGATCCGGTGATGCTGCCAACGAGCTTCTCCTCTGCGACAAATGCGATCGAGGGTTTCACCTCTTCTGCCTCAGACCTGTTCTTGTTTCCGTACCGAAAGGCTCGTGGTTCTGTTCTTCTTGCTCCGACCACAAGAAGCTCAAAAAATTTCCTCTCATTCAAACAAAAATTGTTGATTTCTTTCGGATACAGAGATCTTCGGAATTGATTCAGAAGCCTTGTCGGGATAATCGGAAGAGGCGAAAGAGCTTAGTGGTTTCAAAGAAGAAGAGGAAGCTATTGCCATTCAATCCCAGTGAGGATTCCAAAAGGAGGTTGGAGCAAATGGCTTCTTTGGCGACGGCATTGATAGCGACGGATACGGAGTTCAGTAACGAGCTTACTTACATGCCCGGTATGGCTCGCAGATCAGTGAACAGGGCCAATCTCGAGCGGGGAGGAATGCAGGTTTTATCTAGAGAAGACACTGAAACCTTAACTCTCTGCAAGAACATGATGGAAAGAGGACAATGGCCTCCCCTATTGGTTGTTTTCGATTCACAAGAAGGGTTCACTGTAGAGGCGGATAGATTCATTAAGGATTTAACAATAATCACGGAGTATACTGGCGATGTTGATTACTTGAAGAATCGTGAACATGACGATGGCGATAGCATGATGACTCTGATTTCTGCAGCTAATCCCTCACAGAGCCTTGTTATATGTCCTGATAAACGTGGAAACATTGCTCGTTTCATCAGTGGCATCAACAATCACACCCCGGATGGAAAGAAGAAGCAGAATCTGAAATGCGTGAGATTCAATGTCAATGGCGAGTGTCGGGTTTTACTGATCTCAAGCAGAGATATACCGAAGGGTGAGAGGTTGTATTACGATTACAATGGTCACGAGCACGAGTATCCGACTCTGCACTTTGTCTAA 1032 0.4632 MVAATALRRRRTQAPNPLSHLTHEGQGDYSNAYCEQCRSGDAANELLLCDKCDRGFHLFCLRPVLVSVPKGSWFCSSCSDHKKLKKFPLIQTKIVDFFRIQRSSELIQKPCRDNRKRRKSLVVSKKKRKLLPFNPSEDSKRRLEQMASLATALIATDTEFSNELTYMPGMARRSVNRANLERGGMQVLSREDTETLTLCKNMMERGQWPPLLVVFDSQEGFTVEADRFIKDLTIITEYTGDVDYLKNREHDDGDSMMTLISAANPSQSLVICPDKRGNIARFISGINNHTPDGKKKQNLKCVRFNVNGECRVLLISSRDIPKGERLYYDYNGHEHEYPTLHFV* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00209 343 CDD SET_ATXR5_6-like 206 343 - -
Eupl08g00209 343 ProSitePatterns Zinc finger PHD-type signature. 34 78 IPR019786 -
Eupl08g00209 343 SMART set_7 209 337 IPR001214 GO:0005515
Eupl08g00209 343 FunFam Histone-lysine N-methyltransferase ATXR5 115 343 - -
Eupl08g00209 343 Pfam SET domain 247 331 IPR001214 GO:0005515
Eupl08g00209 343 ProSiteProfiles Zinc finger PHD-type profile. 31 81 IPR019787 -
Eupl08g00209 343 CDD PHD_BAZ2A_like 33 78 - -
Eupl08g00209 343 SUPERFAMILY FYVE/PHD zinc finger 23 86 IPR011011 -
Eupl08g00209 343 SMART PHD_3 33 79 IPR001965 -
Eupl08g00209 343 MobiDBLite consensus disorder prediction 1 24 - -
Eupl08g00209 343 Pfam PHD-finger 33 79 IPR019787 -
Eupl08g00209 343 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 105 341 - -
Eupl08g00209 343 SUPERFAMILY SET domain 201 333 IPR046341 -
Eupl08g00209 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 89 IPR013083 -
Eupl08g00209 343 ProSiteProfiles SET domain profile. 209 331 IPR001214 GO:0005515
Eupl08g00209 343 Gene3D SET domain 115 343 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00209 Eupl-Chr8 3531009 3534346 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00209 29 95 C2H2 Transcription Factor Family AT3G01460 34.328 5.09e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Eupl08g00209 SET 0.00013 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00209 K24406 - nnu:104594264 565.074