Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00205 ATGGATAATCCTGATGTTCCTCCATTCTTCCTCTGCCCCATCTCCCTGCAAGTCATGAAGGACCCAGTAACTGTCTGGACTGGCATGACGTATGATCGAGAGAGCATCCAAAAATGGCTATTCTCTTACAAACACAAGACTTGTCCTGTTACAAAACAGCTTCTCACCGATTCTAGCCTCACCCCAAATTCCACCCTCCTTCGCCTGATCGAATCGTGGCGTGTGAACAACCCGGCAGAATTATCGACAAAGATCGATCCCCCACGTCCCACCTCTGACTTTTCGATCCTTCTTAGGAAGCTTATTGATGAGGTTAGAGAGCCAAATTCACAAATCAAATCTTTGAGAAAGATCAAATCGTTAATTCAAGAGGACGATGATAACAGGATGTACATGGAGGAAGCGGGTTTTGGTTCTCTTGTAGCATCTCTTATATCCAAAGCTGATACAGAAGAACTTCTACGCGTTACCGAGAAATCGGTAATTGTCCAAGAGGCCATGACTGTGTTGTACCTTCTTAAGCCATCAACGAGGACACTAAAGAAGATCTCAGAAGAGAGAAATGGCCTGCTGATTAAATCTCTTTTCTTGATTATACAACATGGGAGTTACCAAGCTAGAATTCAAGCTATTCTTCTCTTAAAGCATATCTTCAAAGTGGTCGATGACCATTACAAGGCAAAATTGCCGTCGGAGCTCTTCGAAGGCGTCACTGAGATATTAAAGGACCAGAATTCAATCCGAGCGACAAGAGCAGTACTTTCAATCTTAATGGCAGTGATGCCATTTGAGAGAAACAAGCTCAAAGCCGTCGAGGCTGGAGTGGTGTCTGTGCTTGTGGAATTGCTTGCAGAGACTAACGAGAAGCGAGTTTGCGAGATCATGTTGGCTGTGTTAGAAGTATTGTGTGGGAGAGCCGAGGGGCGATCGGCATTCTTGGCACACCCGGCAAGCGTAGCGGCGGTTGTATCGAAGATATTGATGATTTCTCAGATTGCTAATGATAAAGCAGTGAAGGTATTATTATTGGTGTGTAGATTTTGTAAGAGTAGTGGGGTTGTTCAGGAACTTATGGAGGTGGGTGGTGTTGCTAAGCTTTGCATGGTGGTGCAGGCTGAGTGCAGTATGAATACCAAAGAGAAGGCCAAGGAGATTTTAGGGTTTAATTTCAAGGCTTGGAACAAATCACCTTGCTTCTCATGCATCATAGCTTGA 1215 0.4453 MDNPDVPPFFLCPISLQVMKDPVTVWTGMTYDRESIQKWLFSYKHKTCPVTKQLLTDSSLTPNSTLLRLIESWRVNNPAELSTKIDPPRPTSDFSILLRKLIDEVREPNSQIKSLRKIKSLIQEDDDNRMYMEEAGFGSLVASLISKADTEELLRVTEKSVIVQEAMTVLYLLKPSTRTLKKISEERNGLLIKSLFLIIQHGSYQARIQAILLLKHIFKVVDDHYKAKLPSELFEGVTEILKDQNSIRATRAVLSILMAVMPFERNKLKAVEAGVVSVLVELLAETNEKRVCEIMLAVLEVLCGRAEGRSAFLAHPASVAAVVSKILMISQIANDKAVKVLLLVCRFCKSSGVVQELMEVGGVAKLCMVVQAECSMNTKEKAKEILGFNFKAWNKSPCFSCIIA* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00205 404 SUPERFAMILY ARM repeat 94 387 IPR016024 -
Eupl08g00205 404 CDD RING-Ubox_PUB 7 60 IPR045210 -
Eupl08g00205 404 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Eupl08g00205 404 Pfam U-box domain 6 76 IPR003613 GO:0004842|GO:0016567
Eupl08g00205 404 PANTHER WDSAM1 PROTEIN 6 400 IPR045185 GO:0061630
Eupl08g00205 404 Gene3D - 92 387 IPR011989 -
Eupl08g00205 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
Eupl08g00205 404 SUPERFAMILY RING/U-box 4 80 - -
Eupl08g00205 404 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00205 Eupl-Chr8 3463966 3465404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00205 5 399 U-box Gene Family AT2G35930 43.358 7.50e-111 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00205 - - nnu:104604723 525.783