Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00203 ATGGGTTCGAGGCTTAAAGAGGCGCTTAAGACTCTCTGTTGCAACAATGGGTGGTCTTATGGGGTCTTCTGGCGCGTCAATCGTCGAAATTCCATGTTGTTAACCTTGGAAGATGCCTACTTTGAGGAACAAATCGGGATGGTTATTGACAAAATGCTTCAACATGTCCACATGCTAGGAGAAGGAATTATTGGACAAGCTGCTTTTACCGGGAAGCACCGATGGATGTTCTCAGACACTTACTGTGGAGAGTGGAGTCCCGTGGGTTCCGTTGACAATCGAGATGTTTTCCAGGATAATTCCGAGTTTCACCGACAGTTTTCATCTGGAATAAAGACAATTGCAGTGATTTCTGTGGCACCACAAGGTGTAGTGCAGTTTGGATCCACCCAGAAGATTATGGAGAGCTTGGACTTTGTGGATCATATTAAAAGTTTGTTTCATCATCTGGAAAGTGTTAATGGGCTTCTCCTATCGGGAAATGCACCAATGGTTTTGAACAGTGAAATATATGATCCAAGTAGGATAGTTGCTTCTGTAGTTTCTTCTGGAAATTCCTCTTCTATTTATGGAAACATCAAACCCTTGCATGGTGGCAGCTGCAAAGAGATGATTGGAAAAGCCCAATCTGCAACTGTTCTTGCTCAGTCTTCCCCTTTCACTTTGGGTTTGCAAAATGGCAGCACCCCCTTGATGAGTAACTCCTCATTTCACCTTAAAAACCAATTCCAAACGTTCGGTACAGAAGCTCAAGTCATATTATCAACGCCTACCTTGCAGTTACCACATATCTCATCGCAGTCTGCTTCCAGTTCAGCTAACAACTCTGTTGCTAGAAGCCCCAGCATGAGTACATGGAATAGCGAAGGTTCCACTCTGAGTTCATTGGAGCGACAATTGCTGTCTGGAATGGAGATACAGGAGTCTTCAAATATGTTATGTGCAAACACACATACTCTTGCATCTTGCAGGAACACATTTCAGAATTTTCAAGGGGATTCAAACTTTACTTCATTATGTGGCACAAGTGGATTACTTAATACTGCAACTAACACAGCTTTACTTGAGGTTAACAGACCTATTGGATATGACTCAGGAAAACTGGTAGATGTCCAGCATTCGGTTCCATTATTCCATGCGACTGAAAGTGAGCTTCCAAAGGGATTTACTAGCTTTCACACATTTCCAGGGGAGTATAGACCAGTCAATGCCACGATGGATCTTTCTAAGCTGAACCACCCATTAAATAATCTCTTCCAGTGGAATGCTCAGCCAGTAGAGCAGAGTAATAATCGATTGGCTGCACCACTGAATGAAGATCCATCACAAGCACTTAGAGTTGTCTCCACATCATCTGGCATGGTTGGAGGCGATGTTTTTAGTGGCATCCCAGTCAATCACATGGCTAATTCTGTGCAGGATTCCATCATTGATACCATAAATTCTTCCGCTGTGGTTTGTGATAGGAAAGAGAATTCATTGAATCTTCCCATCCAACTACCTGCTGATAATGGCATGTTCTGTAGTTTGGGATTGGATTTTGTGCAGAGCCAGGGGAGGGAGTGTTGGGATGATATTATATTGCCAGTAGGGAGTGGTAGTCGCTCAAGTTTGAGTACTAGTATTTCAGAATGCATCTCAGAGTTGGATGTTGGGTCCATGACTGGTCCACAGAAAGGGTTGTTCACGGAGTTTGGGCTCGAACGGCTATTGGATGGTGTTGTTGGTAACTCTGATACTAAACCCAGTTCAGAGGATCAATTGTCCACAACTACAATAGCAAGAACAGGAAGTACCTCAGTGTACAGTAATCAAGTTCAGTTGGCGGGTCTTTCCAGTTTGGGTGGAAGTATGGATGAATTGCTGCCTGAATGTAATCCAGAGAAGATGACCATGCACAGAAATCAAAAAGAGGCTCTCCTAGGTTCATGGATTGACGACAGTTATAGCATCAACGCTGAGAGTGCAATCACACAGCCTAAGATGCCTGAAGAACCAACAAAAGCCACTAGGAAAAGAGCTCGGCCTGGGGAAAGTACTCGGCCAAGGCCAAAAGACCGTCAACAGATCCAAGACCGTGTGAAAGAGCTGCGGGAGATTGTGCCTAATGGTGGAAAGTGTAGCATTGATGCGTTGTTGGACCGCACCATCAAACACATGCTCTTCTTGCAAAGTGTGACAAAATATGCAGACAAACTTAAACAAGCTGATGAACCCAAGATGATTGGTGATGAGAGTGGCGTGGTTCTAAAAGACAACTCAAGTGGGGGTGGGGGTGGTGCTACCTGGGCATTTGAAGTTGGGGGTCAAACCATGGTTTGCCCAATTATAATTGAAGACCTCAGCCCCCCTGGCCAGATGCTTGTAGAGATGCTTTGTGAAGAACGGGGATTCTTTCTTGAGATAGCAGACATAATTCGGGGGTTTGGCTTGACTATCTTAAAGGGGGTGATGGAAGTTCGAGAGGATAAGATATGGGCACGCTTTATTGTTGAGGCAAACAGGGATGTAACCAGAATGGATATATTTCTTTCTCTAGTTCAGCTTCTACAACAAACAAGTGGGATCAGTTCCAGTAATCAGCCAAGTAAAGTTATTGACAATGGGGTTCCACTGTTTACCAATTACCAGCACTCTCCAATACAACTTCCAATCGGATTGGCGGATGGACTGCAGTGA 2679 0.4427 MGSRLKEALKTLCCNNGWSYGVFWRVNRRNSMLLTLEDAYFEEQIGMVIDKMLQHVHMLGEGIIGQAAFTGKHRWMFSDTYCGEWSPVGSVDNRDVFQDNSEFHRQFSSGIKTIAVISVAPQGVVQFGSTQKIMESLDFVDHIKSLFHHLESVNGLLLSGNAPMVLNSEIYDPSRIVASVVSSGNSSSIYGNIKPLHGGSCKEMIGKAQSATVLAQSSPFTLGLQNGSTPLMSNSSFHLKNQFQTFGTEAQVILSTPTLQLPHISSQSASSSANNSVARSPSMSTWNSEGSTLSSLERQLLSGMEIQESSNMLCANTHTLASCRNTFQNFQGDSNFTSLCGTSGLLNTATNTALLEVNRPIGYDSGKLVDVQHSVPLFHATESELPKGFTSFHTFPGEYRPVNATMDLSKLNHPLNNLFQWNAQPVEQSNNRLAAPLNEDPSQALRVVSTSSGMVGGDVFSGIPVNHMANSVQDSIIDTINSSAVVCDRKENSLNLPIQLPADNGMFCSLGLDFVQSQGRECWDDIILPVGSGSRSSLSTSISECISELDVGSMTGPQKGLFTEFGLERLLDGVVGNSDTKPSSEDQLSTTTIARTGSTSVYSNQVQLAGLSSLGGSMDELLPECNPEKMTMHRNQKEALLGSWIDDSYSINAESAITQPKMPEEPTKATRKRARPGESTRPRPKDRQQIQDRVKELREIVPNGGKCSIDALLDRTIKHMLFLQSVTKYADKLKQADEPKMIGDESGVVLKDNSSGGGGGATWAFEVGGQTMVCPIIIEDLSPPGQMLVEMLCEERGFFLEIADIIRGFGLTILKGVMEVREDKIWARFIVEANRDVTRMDIFLSLVQLLQQTSGISSSNQPSKVIDNGVPLFTNYQHSPIQLPIGLADGLQ* 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00203 892 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 5 43 IPR025610 -
Eupl08g00203 892 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 147 IPR025610 -
Eupl08g00203 892 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 1 885 IPR043561 GO:0003700|GO:0006355
Eupl08g00203 892 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 674 723 IPR011598 GO:0046983
Eupl08g00203 892 MobiDBLite consensus disorder prediction 665 691 - -
Eupl08g00203 892 MobiDBLite consensus disorder prediction 655 691 - -
Eupl08g00203 892 MobiDBLite consensus disorder prediction 265 290 - -
Eupl08g00203 892 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 687 729 IPR036638 GO:0046983
Eupl08g00203 892 CDD bHLH_AtLHW_like 678 747 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00203 Eupl-Chr8 3434476 3441999 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00203 566 870 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 50.000 1.24e-82 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00203 - - nnu:104594230 993.03