Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00191 ATGAGGCCGGTTTTTTGTGGTAATTTTGAGTACGAGACTCGTCAATCTGACTTGGAGCGTTTGTTCTCCAAATTTGGAAGGGTCGAACGTGTCGACATGAAATCTGGGTTTGCTTTTGTGTATTTTGAAGATGAGCGTGATGCTGAGGATGCCATCCGAGGTGTAGACAATACACCATTTGGTTACAGCAGACGCAGGCTCTCTGTGGAGTGGGCAAGGCAGGGGGAGCGTGGTTCACGTCATCGTGATGGGTCTAGATCAATGGCAAACCAGAGGCCCACAAAAACACTGTTTGTGATAAACTTTGATCCGATTCATACAAGGATTCGAGACATTGAAAGGCATTTTGAACCCTATGGGAAGGTTCTACATGTGAGAATTCGAAGGAACTTTGCATTTGTGCAGTTCGAAACACAGGAAGAGGCTACAAAAGCTCTCGAGTGCACCCACATGAGCAAGGTTTTGGACAGGGTGGTGTCTGTGGAATATGCATTAAGGGATGATGGTGAGAGGGGTGACAGGCGTGACAGCAGCCCTAGGAGAGGAGGTTATGGGGGGCGTGGCGAAAGCCCATATGGGGGCCGTTCAAGAAGTCCGGTGCAACGCAGGGGGGGCCGAGCAAGTCCTGATTATGGGCGGGCTCGCAGTCCAGTTTATGAGAGATACAATGGTCCATCATCCTACAACAGGGACCGGAGTCCGGATTATGGTAGATATCCAAGCCGCTCACCTGTTCGGAGGTCAAGGACGTGA 753 0.5033 MRPVFCGNFEYETRQSDLERLFSKFGRVERVDMKSGFAFVYFEDERDAEDAIRGVDNTPFGYSRRRLSVEWARQGERGSRHRDGSRSMANQRPTKTLFVINFDPIHTRIRDIERHFEPYGKVLHVRIRRNFAFVQFETQEEATKALECTHMSKVLDRVVSVEYALRDDGERGDRRDSSPRRGGYGGRGESPYGGRSRSPVQRRGGRASPDYGRARSPVYERYNGPSSYNRDRSPDYGRYPSRSPVRRSRT* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00191 250 Gene3D - 1 85 IPR012677 -
Eupl08g00191 250 Gene3D - 86 179 IPR012677 -
Eupl08g00191 250 FunFam Serine/arginine-rich splicing factor RS31 88 177 - -
Eupl08g00191 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Eupl08g00191 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 159 IPR000504 GO:0003723
Eupl08g00191 250 SMART rrm1_1 96 162 IPR000504 GO:0003723
Eupl08g00191 250 SMART rrm1_1 3 70 IPR000504 GO:0003723
Eupl08g00191 250 FunFam Serine/arginine-rich splicing factor RS31 1 87 - -
Eupl08g00191 250 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 95 247 - -
Eupl08g00191 250 MobiDBLite consensus disorder prediction 167 250 - -
Eupl08g00191 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 166 IPR000504 GO:0003723
Eupl08g00191 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Eupl08g00191 250 SUPERFAMILY RNA-binding domain, RBD 2 167 IPR035979 GO:0003676
Eupl08g00191 250 MobiDBLite consensus disorder prediction 167 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00191 Eupl-Chr8 3326520 3331021 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00191 4 168 Eukaryotic Initiation Factors Gene Family AT1G49760 22.527 4.92e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00191 K12893 - ming:122082869 371.703