Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00184 ATGACAACAGACATGATTGTTAATGTCTCATTTGTTCCAGCTTCAGAAGTCCTTTCTCATATTGTAGAGGCAATAGCTGAGACCGTACGTGCCGCTGAGGATGTTCTAATTGAGAAGGAGAGCTTTGCGAAAATCTCAACTTACTTGGAAAGGATTGTTCCTGTCCTAAAAGAGTTGATTAAGAAAAACATTAATAGCTCTGAGAGTTTGTACAATGCTACTGAAATTCTTGGTCGGGAGATTAAAGTTGCGAAACAGTTAGCTCTGGAATGCAGCAAGAGGAACAGGGTCTATCTGTTAGTCAATTGCCGGAAGATTGTTAAGAGATTACAGGACACGACAAGAGAGATTAGCCGGGCACTGGGGCTCATCCCTTTGGCCTCCCTGGATCTCTCATCAAGTATAAATGAAGAGATCAGCAAGCTATGTGACAATATGTTGACAGTGGAGTTCAGGGCAGCTGTAGCAGAGGAAGAAATCTTGGAGAAAATTGAGTCAGGAATTCGGGAGAGGAATGTTGATCGTTCTTATGCAAATAAGTTGCTGGTTCTCATCGCAGAGGCTGTTGGGATATCAAATGAACGGTCAGAATTGAAGAAGGAATTCGAAGCATTCAAGAATGAAATAGAAACAACGAAGGACAGGGCCGAGGCTATACAAATGGATCAAATCATTGCTTTGCTTGGAAGGGCAGATGCCACGTCATCTCCCAAGGAGAAAGAGCTGAAGTATTTCAACAAGAGGAATTCTTTAGGTAGTCAGCCATTGGAGCCTCTCCAGTCATTTTATTGCCCGATTACTAGGGATGTTATGGTGGACCCCGTTGAGACTCCCTCCGGGCAGACATTTGAGAGAAGTGCAATAGAGAAGTGGTTTGAAGATGGGAACAACATCTGTCCCTTGACCATGACCCCATTAACCCCGGCAACACTACGGCCTAACAAAACTCTGCGGCAATCGATCGAAGAATGGAAGGATAGGAACACCATGATCACAATTGCTTCCCTGAAACCTAAACTCCTGTCAGATGAAGATCAAGAAGTGCTTCGTTCCCTGGGCCAGCTGCAGGATCTCTGTGAAGAAAGAGACTTGCATCGAGAATGGGTAGCACTGGAGAACTACATACCAATTCTTATTGGACTTCTTCGTGCAAAAAATCGCGAGATAAGGAATCATGCTTTGGTTATCCTCTTCATCTTGGTGAAGAATAGTGATGACGCCAAGGAAAGAATCACGAAAGAGGATAATGCAATTGAATCCATTGTTCATTCCCTTGCACGTCGTATTGGGGAAAGTAAGTTAGCAGTGTCATTGCTATTGGAACTATCAAAAAGTGATGTTGTACGTGACCGCATTGGGACGGTTCAGGGATGTATACTCCTCCTTGTGACTATGTCAAGCAGCAATGACACTGAAGCTGCTAAAGATGCGAATGAGATTTTAGAGAATCTGTCATTCCTCGATCAGAATGTTATACTGATGGCAAAGGCAAATTATTTTAAACCTTTGTTGCAGCGTCTTTCTTCAGGGCCAGGAAATGTCAAAAAGATCATGGCGGAAACTTTAGCTGAAATGGAGTTGAGTGATCACAATAAATGCATTCTGTTTGAAGATGGAGTACTGGGGTCACTTCTTCCCCTGGTCTCACATGGTGATGCAGAGATGAAGAAAGTGACTGTCAAAGCTCTTCAGAACCTCTCGAGCATACCTCAGATTGGCTTGCAGTTGATTAGAGAAGGGGCACTGGGCCCACTACTTGAACTCCTCTACCGTCACAGCTCATCATCCCCAAACTTGCGGGAACATGTTGCGGCCACAATTATGAACCTTGCTATATCAACCACGGCGAATGAAGCCAATCAGACACAGGTGTCCTTGCTAGAATCTGATGACGACATTTTCAAGCTCTTCTCCTTAATAAACTTGACAGTACCTGATGTGCAACAAAGCATACTCCGGACCTTTCGTGCCATGTGCCAACCCCCCTCTGCAACAGACATCAGGTCTAAGCTAAGACAGTGCTCGGCTGTTCAAGTACTGGTTCAATTGTGTGAGCTCGATAACATTGCCATACGGGCAAATGCTGTAAAGCTTTTCTGTTGTTTGACAGAAGATGCCGACGACGGCACACTATCAGAGCATGTGGGTCAGAGATGCATTGAGACTTTACTCAGGATCATCAGAACTTCCAATGATGAGGAAGAGATTACCGCTATTATGGGTATATTCTCTAACCTCCCCAGAGACCATATCCAGATCACTCAGTGGCTTGTAGATGCTGGGGCGCTTCAAATCATTTTCAAATTTCTCACAGATGGAAATTGGAATGGTTCCTATAAAAACCAGCTAATAGAAAATGCTGTTGGAACCTTATGCCGTTTCACTGTTTCAACAAACCAGGAATGGCAAAAGAGAGCAGCTGAAGCTGGCATTATCCCGCTGCTGGTGCGGTTAATAGGATCTGGAACCGCTGTGGCAAAACGGCATGCAGCCATTTCACTTGCTCAGTTTTCTGAGAATTCATTTGGGCTGAGCATGCCAATAGAGAGACGTAGGGGATTCTGGTGCTTCTCTCCGCCACCTGAATGTGGCTGCCCGGTGCACATGGGCATTTGTACTGTGGAGTCATCATTTTGCATTGTGGAGGCTGATGCAGTGCAACCCTTGGTGAGGGTGCTCGGGGAGCCGGATCTTGGGGCCTGCGAGGCTGCTTTGCAAGCACTGTTGACACTGATTGATGGAGAAAGACTGCAGAGTGGTAGTAAGGTGCTTGGTGAGGCAAATGCGATTGGGCCAATCATAAAGTTACTAAGCTCCCCTTCTGCCAACTTACAGGAGAAGTCTCTGCATGCTTTAGAAAGGATTTTCCGGCTGGTGGAGTTCAAGCAAAAGTATGGATCTTCAGCTCAGATGCCCTTGGTTGATATAACTCGGAGAGGAAATAGTACAACGAAATCTTTGGCAGCCCGAATACTTGCTCACTTGAGTGTGCTTCATGAGCAGTCTTCTTATTTCTAA 3018 0.452 MTTDMIVNVSFVPASEVLSHIVEAIAETVRAAEDVLIEKESFAKISTYLERIVPVLKELIKKNINSSESLYNATEILGREIKVAKQLALECSKRNRVYLLVNCRKIVKRLQDTTREISRALGLIPLASLDLSSSINEEISKLCDNMLTVEFRAAVAEEEILEKIESGIRERNVDRSYANKLLVLIAEAVGISNERSELKKEFEAFKNEIETTKDRAEAIQMDQIIALLGRADATSSPKEKELKYFNKRNSLGSQPLEPLQSFYCPITRDVMVDPVETPSGQTFERSAIEKWFEDGNNICPLTMTPLTPATLRPNKTLRQSIEEWKDRNTMITIASLKPKLLSDEDQEVLRSLGQLQDLCEERDLHREWVALENYIPILIGLLRAKNREIRNHALVILFILVKNSDDAKERITKEDNAIESIVHSLARRIGESKLAVSLLLELSKSDVVRDRIGTVQGCILLLVTMSSSNDTEAAKDANEILENLSFLDQNVILMAKANYFKPLLQRLSSGPGNVKKIMAETLAEMELSDHNKCILFEDGVLGSLLPLVSHGDAEMKKVTVKALQNLSSIPQIGLQLIREGALGPLLELLYRHSSSSPNLREHVAATIMNLAISTTANEANQTQVSLLESDDDIFKLFSLINLTVPDVQQSILRTFRAMCQPPSATDIRSKLRQCSAVQVLVQLCELDNIAIRANAVKLFCCLTEDADDGTLSEHVGQRCIETLLRIIRTSNDEEEITAIMGIFSNLPRDHIQITQWLVDAGALQIIFKFLTDGNWNGSYKNQLIENAVGTLCRFTVSTNQEWQKRAAEAGIIPLLVRLIGSGTAVAKRHAAISLAQFSENSFGLSMPIERRRGFWCFSPPPECGCPVHMGICTVESSFCIVEADAVQPLVRVLGEPDLGACEAALQALLTLIDGERLQSGSKVLGEANAIGPIIKLLSSPSANLQEKSLHALERIFRLVEFKQKYGSSAQMPLVDITRRGNSTTKSLAARILAHLSVLHEQSSYF* 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00184 1005 SUPERFAMILY ARM repeat 336 525 IPR016024 -
Eupl08g00184 1005 Gene3D - 14 128 IPR036537 GO:0007166
Eupl08g00184 1005 CDD MLKL_NTD 19 146 - -
Eupl08g00184 1005 Pfam U-box domain 262 328 IPR003613 GO:0004842|GO:0016567
Eupl08g00184 1005 SUPERFAMILY RING/U-box 249 330 - -
Eupl08g00184 1005 CDD RING-Ubox_PUB 262 311 IPR045210 -
Eupl08g00184 1005 Gene3D - 333 432 IPR011989 -
Eupl08g00184 1005 Gene3D - 433 849 IPR011989 -
Eupl08g00184 1005 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842|GO:0016567
Eupl08g00184 1005 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 15 1005 - -
Eupl08g00184 1005 Gene3D - 870 1004 IPR011989 -
Eupl08g00184 1005 SUPERFAMILY ARM repeat 502 841 IPR016024 -
Eupl08g00184 1005 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 238 332 IPR013083 -
Eupl08g00184 1005 SUPERFAMILY ARM repeat 787 996 IPR016024 -
Eupl08g00184 1005 SMART arm_5 873 913 IPR000225 GO:0005515
Eupl08g00184 1005 SMART arm_5 749 796 IPR000225 GO:0005515
Eupl08g00184 1005 SMART arm_5 799 839 IPR000225 GO:0005515
Eupl08g00184 1005 SMART arm_5 528 568 IPR000225 GO:0005515
Eupl08g00184 1005 SMART arm_5 664 704 IPR000225 GO:0005515
Eupl08g00184 1005 SMART arm_5 362 402 IPR000225 GO:0005515
Eupl08g00184 1005 SMART arm_5 917 957 IPR000225 GO:0005515
Eupl08g00184 1005 SMART arm_5 570 612 IPR000225 GO:0005515
Eupl08g00184 1005 SMART Ubox_2 261 324 IPR003613 GO:0004842|GO:0016567
Eupl08g00184 1005 Coils Coil 188 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00184 Eupl-Chr8 3268466 3275797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00184 260 1005 U-box Gene Family AT1G76390 29.898 3.63e-71 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00184 - - nnu:104594089 1466.44