Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00180 ATGCCCCCTCGACCAGTTCAGAAAAAGCTCCAGGCGAAAACCTCCATTAAATCCTCTCCAAAATCCCTAAAAAAACCCTCAGAACCGGAAAACACTTCGAAGCCCGAAGCGGAAGCCGATCAGAAGCTCGAACACCCTCCCAAATCCGATCCTCCTCAACGTATCAAGCTCGAAATCGCCAATAATGTTAGAGAAACGTTTGATCTCAATGAACCAGCGGATAAATTGTCCGAAGAAGTAGATGAAGTTGGCCAGATTGCTGAAGTTAAAGAAGAAATTTTAATGGAGAATGAAAACGAAGTTGATGAGAATGAAGGAGATGTGGAGGGTGAAAATATTGAAGAGGTTTCAGAGCCGACTGAGGAGAAGAAGAAGCAGAAAGAGTATGAGGTTTTTGTCGGTGGGCTCGATAGAGAAGCAGTAGAGGAGGACTTGGAGAAGGTTTTTAAGAAGGTTGGTGAAGTAGTCGAAGTGAGGTTAGTGAAGAACAAACACTCGCAGAAGAATAAAGGGTTTGCTTTCGTCAGATTCGCTACTATAGATCAAGCAAAGAGAGCTGCTTCTGAGCTTAAATTCACTCGGGTTAGAGGTAAGGTCTGTGGAGTAACACGAAACAATGACAATGAAACTCTCCATCTGGGGAATATATGCACTACATGGACTAAAGATACACTTGTGCAAATGTTGAAGTCTTACAAGTTAGAAAACCTTGACGATGTTCATCTGATTGATGACCCAAACAATAAAGGAAAGAACCGAGGCTATGCATTTCTTAATTTCAGCACTCATATGGATGCTGTGGCTGCCTGTAGCAAACTACAGAAAGGAGATGTTTTCTTTGGTACAACCGTGAGAGGAGAGGTTGCTTTTGCTAAATCTGCTGTTGAGCCTGATGAGGAGGTTATGGCCCAGGTGAAATCTGTTTTCTTGGATGGTCTGCCAACTAGTTGGGACGAAGCGCAAGTGCAGGAACAGTTGAAGAAGTATGGTGAAATCGAACATGTGCAGCTTGCTCGTAATATGCCTTCTGCCAAGCGCAAGGATTTCGGCTTTGTCTCCTTTAGAACTCGGGAGGCAGCACTGGCTTGCATTGATGCTGTGAACAAGGATGGCATTGTTGACGGAGCTCAAAGGGTTTTACTGAAGGCCACTCTGCGGAAGCCTCTGCAAAAACGGGTACCATCAACTGTGGGTAGTTGGAGAGGGTACAATAGTAACAGCGATGGTTGGGGTCTGCGATCACGTGGAGTTGGTCGTTCATACCCTAATAGGCCAAGCAGAAGTGGTGAATCATCAGGTCTGGATCATGATCGTAGATTTGGTGGCTTTAGTCGATACTCAAGTAGAGGAGATGAATTGGAAGCAGAATTGTCTCCGACAGGGAGATATGATTCTCGGTTCAGAAGGGAATCTGTTCGGCAAGTGCCAGCTCCAGTGACTGCTCACAGCAGATCTAGAGACCCATATCTAGAGAGCAGTTCATCTAGTAGACGTGCCTTGGGGAATTACCGGGATTTTCCACCCTCCTATTCTCGAGTTCCTTCTCATGGAGTATATGATGATGATAGTTACGATCCTAGATTTGAGTATTATGGGAACAGTTCAGCAGATGCTTATGATTATCCTACTCCATCTAGATTGAAGCGTACCTATTCTACAATTGATGATGACCAGCTGGTGTCAAGATCTCTGACAAGGCGTGCTAGAAGTGGGGGGTCGGATTTAGATGTGGATACTTATCCTGTACATGATGTTTCCTCTTATGATGAATATTCAAGGTATAGTTTGGGAAAACATCTGATACCGCATGAGCATGTTAAATGGTCTCATCAGTTCCAACACTGTGGATCCTGTTACCCACAGGTTTTGAATGTTGTTGAGTGTTGA 1887 0.4446 MPPRPVQKKLQAKTSIKSSPKSLKKPSEPENTSKPEAEADQKLEHPPKSDPPQRIKLEIANNVRETFDLNEPADKLSEEVDEVGQIAEVKEEILMENENEVDENEGDVEGENIEEVSEPTEEKKKQKEYEVFVGGLDREAVEEDLEKVFKKVGEVVEVRLVKNKHSQKNKGFAFVRFATIDQAKRAASELKFTRVRGKVCGVTRNNDNETLHLGNICTTWTKDTLVQMLKSYKLENLDDVHLIDDPNNKGKNRGYAFLNFSTHMDAVAACSKLQKGDVFFGTTVRGEVAFAKSAVEPDEEVMAQVKSVFLDGLPTSWDEAQVQEQLKKYGEIEHVQLARNMPSAKRKDFGFVSFRTREAALACIDAVNKDGIVDGAQRVLLKATLRKPLQKRVPSTVGSWRGYNSNSDGWGLRSRGVGRSYPNRPSRSGESSGLDHDRRFGGFSRYSSRGDELEAELSPTGRYDSRFRRESVRQVPAPVTAHSRSRDPYLESSSSSRRALGNYRDFPPSYSRVPSHGVYDDDSYDPRFEYYGNSSADAYDYPTPSRLKRTYSTIDDDQLVSRSLTRRARSGGSDLDVDTYPVHDVSSYDEYSRYSLGKHLIPHEHVKWSHQFQHCGSCYPQVLNVVEC* 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00180 628 SUPERFAMILY RNA-binding domain, RBD 121 205 IPR035979 GO:0003676
Eupl08g00180 628 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 291 IPR000504 GO:0003723
Eupl08g00180 628 MobiDBLite consensus disorder prediction 1 54 - -
Eupl08g00180 628 CDD RRM_SF 211 285 - -
Eupl08g00180 628 SUPERFAMILY RNA-binding domain, RBD 207 369 IPR035979 GO:0003676
Eupl08g00180 628 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 129 207 IPR000504 GO:0003723
Eupl08g00180 628 MobiDBLite consensus disorder prediction 23 52 - -
Eupl08g00180 628 CDD RRM_SF 308 368 - -
Eupl08g00180 628 CDD RRM_SF 131 202 - -
Eupl08g00180 628 Gene3D - 298 388 IPR012677 -
Eupl08g00180 628 MobiDBLite consensus disorder prediction 411 518 - -
Eupl08g00180 628 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 213 284 IPR000504 GO:0003723
Eupl08g00180 628 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 370 IPR000504 GO:0003723
Eupl08g00180 628 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 131 199 IPR000504 GO:0003723
Eupl08g00180 628 Gene3D - 209 292 IPR012677 -
Eupl08g00180 628 MobiDBLite consensus disorder prediction 486 500 - -
Eupl08g00180 628 Gene3D - 64 208 IPR012677 -
Eupl08g00180 628 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 7 561 - -
Eupl08g00180 628 MobiDBLite consensus disorder prediction 100 122 - -
Eupl08g00180 628 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 386 IPR000504 GO:0003723
Eupl08g00180 628 MobiDBLite consensus disorder prediction 100 116 - -
Eupl08g00180 628 SMART rrm1_1 130 203 IPR000504 GO:0003723
Eupl08g00180 628 SMART rrm1_1 307 382 IPR000504 GO:0003723
Eupl08g00180 628 SMART rrm1_1 210 287 IPR000504 GO:0003723
Eupl08g00180 628 MobiDBLite consensus disorder prediction 430 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00180 Eupl-Chr8 3213599 3222765 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00180 131 373 Eukaryotic Initiation Factors Gene Family AT1G49760 21.970 7.39e-07 50.4