Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00174 ATGCTAGGAATCATGATTCCTACTAGTCCGTTTGTTCTTCTGTTCGCGATCGCTGGTTTGTTTGTAATCCTTCGAGTTTTCCTATCTGGTACGGTTTTTTTATATTTTCTGAAAAAATGGTGGAGATCTATTGAGGATTGGTTTCATGTTTATCAATTCTACAAAGTTCCAGAGTACAACGAGAGCTTTCAAGAGAATCAGCTTTACAGAAAAGTTTCCACGTACGTGAGCTCCTTGGCTTCGATTGAAGACTCCGATTTTGCGAACCTGTTCTCCGGGAAAAAATCGAACGAAATCTCCGTCCAGCTCGATTCGAACCAGACCGTACACGATGCGTTCCTTGGTGCGAGTCTCTCGTGGAAAAACGAAGAGAAAAGCGATGGGAACAGTTGCAGAACGTTCGTTTTGAAGATCAAGAAGAAAGACAAGCGTCGAATCCTCCGTCCGTACCTGCAACACATCCACTCGGTTTCAGACGAGATCGAGTTGAGAAAAAAAGAGGTAAAGCTTTATACGAACACGGAAAAAGAGAATTGCAGCAACGGGCGATGGAGATCCGTCCCGTTCACGCATCCATCGACTCTCGACACTGTCGCCATGGATTCCGATCTAAAAAATAAGGTAAAATCCGACCTCGAATCGTTCCTCAAATCAAAGCAGTACTACCACCGACTCGGTCGAGTCTGGAAACGCAGCTACCTACTATACGGTCCATCCGGGACTGGAAAATCTAGCTTCGTCGCTGCCATGGCGAGGTTCCTCTGTTACGATGTATATGATGTCGATCTCTCCAAAGTCTCCGAAGATTCGGATCTGAAAATGCTTCTGTTACAAACGACAAACAGGTCCGTGATCGTCGTCGAAGATTTGGATCGATTCCTCAGCGAGAAATCAACCTCTGTGAGCTTATCGGGGGTTCTAAACTTCATGGATGGGATCTTCTCGTGCTGTGGGGAAGAACGAGTGATGGTCTCCACAATGAACAGTAAAGAACACATCGATCCAGCCATTTTAAGACCTGGAAGGATAGATGTTCACATATACTTCCCTCTTTGTGATTTCTCTGCTTTCAAGACTCTCGCGAACAGTTATTTAGGGCTCAAAGATCACAAGCTCTTCCCTCAAGTCGAAGAGATTTTCCAGAACGGAGCGACTATAAGCCCTGCTGAAATCGGTGAGATCATGATCGTTAACCGGAGCTCGCCGAGTCGGGCTTTGAAATCGGTCATCACAGCTTTGCAAAGCAACGGTGATGGGAAGGGATCGGGTAAGATCGGACGGCGGTTGAATGAAAGCAATTCGGGGAAAGAAAGGTCAGGAGACGAGTCGGGGGAACCCAGTGGGGTGATTTGCAGGGAGAGCATTCACACGGTAAGGGAGTTTCGGAAACTGTACGGTTTGCTAAGGATGAAGAGCAGCGGAAGAAAGGCGACCGCGTTCGATCCGAGTTCAGTGGAGAAGGAAGGTTGA 1470 0.4701 MLGIMIPTSPFVLLFAIAGLFVILRVFLSGTVFLYFLKKWWRSIEDWFHVYQFYKVPEYNESFQENQLYRKVSTYVSSLASIEDSDFANLFSGKKSNEISVQLDSNQTVHDAFLGASLSWKNEEKSDGNSCRTFVLKIKKKDKRRILRPYLQHIHSVSDEIELRKKEVKLYTNTEKENCSNGRWRSVPFTHPSTLDTVAMDSDLKNKVKSDLESFLKSKQYYHRLGRVWKRSYLLYGPSGTGKSSFVAAMARFLCYDVYDVDLSKVSEDSDLKMLLLQTTNRSVIVVEDLDRFLSEKSTSVSLSGVLNFMDGIFSCCGEERVMVSTMNSKEHIDPAILRPGRIDVHIYFPLCDFSAFKTLANSYLGLKDHKLFPQVEEIFQNGATISPAEIGEIMIVNRSSPSRALKSVITALQSNGDGKGSGKIGRRLNESNSGKERSGDESGEPSGVICRESIHTVREFRKLYGLLRMKSSGRKATAFDPSSVEKEG* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00174 489 Pfam ATPase family associated with various cellular activities (AAA) 234 351 IPR003959 GO:0005524|GO:0016887
Eupl08g00174 489 Gene3D - 185 351 IPR027417 -
Eupl08g00174 489 MobiDBLite consensus disorder prediction 417 449 - -
Eupl08g00174 489 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 412 IPR027417 -
Eupl08g00174 489 SMART AAA_5 229 353 IPR003593 GO:0016887
Eupl08g00174 489 PANTHER BCS1 AAA-TYPE ATPASE 49 415 - -
Eupl08g00174 489 Pfam Domain associated at C-terminal with AAA 36 121 IPR025753 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00174 Eupl-Chr8 3127689 3129863 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00174 225 347 Calmodulin-binding Proteins AT3G56690 27.737 4.53e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00174 - - ming:122087032 781.171