Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Eupl08g00155 | ATGCAGATCTTCGTTAAAACCCTAACAGGGAAGACCATAACCCTAGAGGTCGAATCGAGCGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCGCCGGATCAGCAGCGACTGATCTTCGCGGGAAAGCAGCTGGAAGATGGCCGTACTCTCGCCGACTACAATATCCAGAAAGAATCAACGCTTCATCTTGTTCTGAGGCTTCGTGGTGGGATTATCGAGCCATCTTTGATGGCGTTGGCCAGAAAGTATAACCAAGAAAAGATGATCTGCCGCAAATGTTATGCACGATTGCATCCTCGTGCTGTGAACTGCAGGAAAAAGAAGTGTGGGCACAGTAACCAGGTAAATTTTTTGTACTGTCCATTGCTGGTTTCTATATATCACTTCTAA | 408 | 0.4706 | MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQEKMICRKCYARLHPRAVNCRKKKCGHSNQVNFLYCPLLVSIYHF* | 136 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Eupl08g00155 | 135 | SUPERFAMILY | Zn-binding ribosomal proteins | 76 | 119 | IPR011332 | GO:0006412 | |
| Eupl08g00155 | 135 | Gene3D | - | 1 | 79 | - | - | |
| Eupl08g00155 | 135 | SMART | ubq_7 | 1 | 72 | IPR000626 | GO:0005515 | |
| Eupl08g00155 | 135 | FunFam | ubiquitin-60S ribosomal protein L40 | 79 | 123 | - | - | |
| Eupl08g00155 | 135 | Pfam | Ribosomal L40e family | 78 | 121 | IPR001975 | GO:0003735|GO:0005840|GO:0006412 | |
| Eupl08g00155 | 135 | ProSitePatterns | Ubiquitin domain signature. | 27 | 52 | IPR019954 | - | |
| Eupl08g00155 | 135 | PANTHER | UBIQUITIN | 1 | 87 | - | - | |
| Eupl08g00155 | 135 | CDD | Ubl_ubiquitin | 1 | 76 | - | - | |
| Eupl08g00155 | 135 | Pfam | Ubiquitin family | 3 | 74 | IPR000626 | GO:0005515 | |
| Eupl08g00155 | 135 | SMART | Ribosomal_L40e_3 | 77 | 128 | IPR001975 | GO:0003735|GO:0005840|GO:0006412 | |
| Eupl08g00155 | 135 | ProSiteProfiles | Ubiquitin domain profile. | 1 | 76 | IPR000626 | GO:0005515 | |
| Eupl08g00155 | 135 | Gene3D | - | 80 | 122 | IPR038587 | - | |
| Eupl08g00155 | 135 | FunFam | Ubiquitin-60S ribosomal L40 fusion | 1 | 78 | - | - | |
| Eupl08g00155 | 135 | PRINTS | Ubiquitin signature | 11 | 31 | IPR019956 | - | |
| Eupl08g00155 | 135 | PRINTS | Ubiquitin signature | 32 | 52 | IPR019956 | - | |
| Eupl08g00155 | 135 | PRINTS | Ubiquitin signature | 53 | 74 | IPR019956 | - | |
| Eupl08g00155 | 135 | SUPERFAMILY | Ubiquitin-like | 1 | 76 | IPR029071 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Eupl08g00155 | Eupl-Chr8 | 2857430 | 2860447 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Eupl08g00155 | 1 | 121 | Cytoplasmic Ribosomal Protein Gene Family | AT3G52590 | 97.521 | 2.24e-86 | 246 |