Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00145 ATGGAAGAGATCATCTCATCTTCTTCATCTTCTCCATCTTCCATCTTCTCAGTTTGTCATGAAACCCCACCAACCCTGCAACAACGCCTACAACTTCTTGTCCAAAGCCGACCCGAATGGTGGGCTTACGCCATTTTTTGGCGAACTTGTAACGACGACAATGGCCGGGTCATTTTAGCTTGGGGTGATGGTCATTTCCGAGGCAAAAAAGATATACCCAACAGAAAATATAGTCAACAACAACAGAAATTTGGGTTTGATTCGGAACGAAAGAAGGTGATGAAGGGAATTCAAGCACTAATCAACGATAACCCAGAAACTGACGGATCGATGGACGGAGACGTCACCGATGCTGAATGGTTTTACGTGGTGTCGTTAACTCGGTCTTTTGGTGCCGACGACGGAGTACCCGGACGAGCTTATAGTACTGGCAATTCATTATGGTTGACAGGAACTCAAGAGCTTCAGCTGTATAATTGTGAGAGAGCTAAAGAAGCTCACATGCATGGCATTGAGACTTTGGTTTGTATCCCTACATCAAGTGGGGTAGTGGAATTGGGTTCTTCAGATTTGATCAGAGAGAATTGGGGACTAGTGCAACATGCCAAATCACTGTTTGGATCGGACATAGCTAGCTTGATCTCCAAACAGCCAAGCCAAGGAGGACTAATCCCGTTTCTCGATCGAAATCTTTCGTTCGCCGACATCGGTATAATTTCCGGAGTACAAGAAACTTGTCAAGAGAAGCAACAACAACAACAGCAACAGGAAGCAGAAACAAAGAAGGAGGGAACAATGGCTGGACAATCGTCTTCAGTCGACTCGGAGCATTCGGACTCAGAAGGCCTATTCGTCGCTGCAGCTATAGAGAAGAGAAGGCCAAAGAAGAGAGGGAGAAAGCCGGGGAACGGACGGGAAATGCCGTTGAACCATGTCGAAGCCGAACGGCAACGGCGAGAGAAGCTTAACCATCGGTTCTACGCACTCCGAGCCGTGGTCCCCAATGTGTCACGGATGGACAAGGCATCTTTACTTGCTGATGCAGTGTCCTACATCACTGAACTCAAGTCCAAAGTTGAGGAGTTGGAGACCCAACTCCACAAAGAATCCAAGAAAGTAAAGATTGAAACAGTTGATATACTGGATCATCAAAGCACCACCAGTACTGTTGATCACCATCCAAAGCCTAATTCTAATTCTGGTGGAGTTTCCACGATGGAAGTAGAGGTGAAGATTCTTGGTTCAGATGCAATGATCAGAGTACAGTCTGAGAATATGAACCATCCATCTGCAAGGCTGATGGACGCTCTTCGTGACCTTGAATTTCAAGTCCATCACGCAAGTGTATCAAGCGTCAAGGAGCTGATGCTACAGGATGTTGTGGTCAAGCTACCTGATGGACTGAGGACTGAGGAAAGCTTGAAAGCTGCTCTTCTTAGAAGATTAGAGGAGTAG 1455 0.4646 MEEIISSSSSSPSSIFSVCHETPPTLQQRLQLLVQSRPEWWAYAIFWRTCNDDNGRVILAWGDGHFRGKKDIPNRKYSQQQQKFGFDSERKKVMKGIQALINDNPETDGSMDGDVTDAEWFYVVSLTRSFGADDGVPGRAYSTGNSLWLTGTQELQLYNCERAKEAHMHGIETLVCIPTSSGVVELGSSDLIRENWGLVQHAKSLFGSDIASLISKQPSQGGLIPFLDRNLSFADIGIISGVQETCQEKQQQQQQQEAETKKEGTMAGQSSSVDSEHSDSEGLFVAAAIEKRRPKKRGRKPGNGREMPLNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLADAVSYITELKSKVEELETQLHKESKKVKIETVDILDHQSTTSTVDHHPKPNSNSGGVSTMEVEVKILGSDAMIRVQSENMNHPSARLMDALRDLEFQVHHASVSSVKELMLQDVVVKLPDGLRTEESLKAALLRRLEE* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00145 484 Pfam Helix-loop-helix DNA-binding domain 310 355 IPR011598 GO:0046983
Eupl08g00145 484 CDD bHLH_AtAIB_like 303 368 - -
Eupl08g00145 484 MobiDBLite consensus disorder prediction 247 280 - -
Eupl08g00145 484 Gene3D - 303 372 IPR036638 GO:0046983
Eupl08g00145 484 Coils Coil 345 372 - -
Eupl08g00145 484 MobiDBLite consensus disorder prediction 247 278 - -
Eupl08g00145 484 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 303 368 IPR036638 GO:0046983
Eupl08g00145 484 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 26 206 IPR025610 -
Eupl08g00145 484 SMART finulus 312 361 IPR011598 GO:0046983
Eupl08g00145 484 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 306 355 IPR011598 GO:0046983
Eupl08g00145 484 PANTHER MYC 7 481 IPR045084 GO:0003700|GO:0006355
Eupl08g00145 484 Coils Coil 239 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00145 Eupl-Chr8 2710103 2712071 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00145 25 484 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 36.842 1.56e-109 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl08g00145 bHLH-MYC_N 4.4e-57 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00145 - K13422 tcc:18613913 571.237