Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00120 ATGTCTCAACAAAGGCAATTCCAGACGGGGGGAGGAAACAATGCTGGGCAGTTTGGTGACACAACGTATACAAAGATCTTTGTGGGAGGGTTGGCTTGGGAAACACAGAGAGAAACTATGAGGCGTTATTTTGAGCAGTTCGGGGAGATCCATGAAGCTGTAGTGATCACCGATAAGAATACTGGAAGATCTAAGGGATATGGCTTTGTGACATTTAAGGATCCAGATTCGGCTATGAGAGCTTGTCAGGATCCATCTCCTGTGATTGATGGAAGGAGAGCTAATTGCAATCTTGCATCTCTTGGTGCACAGCGGACTCGTCCATCTACTACTCAACATGGTATGGGGAGGTTCAGACAATCATCTGGATCAGTGGCTCCATCCACTTATCAAGGCTCTTCCTCGACGTACTTCCATCAACCTGCTCATTATGCATTTCCTTATTCGGCATACGGGTATAATTCTGGATATTCACAGGAAAACATGTACTCCATGCAGAATTATTGTAATGGATATGGAGGGCAACAGTTTTCGCCTTACTATAGCACAGCCATGGCATCGGGGTCGCCGGGGATTTTCACCAATTACTATCCATTCTACTCTCAATATGCAGAAAGTAGCCAAGCACAGGGTTTTGGCATTCAGTATCCCCAAATGGTACAATACCCATATTTGCCTCGGAATTACGGTGCGACGGGGATCCTATCGCTTCCTTCAGTTTCCTCAGCCACAACCACCACCACTGTAAATGTAACAGGCGCAACAGCGAGCGTAGCAGGGACAGGATCGGCATTGGCCACTACACAGGCCCCGGGAACTACCACAGAACAGAATTCATCAGCTTAA 846 0.4704 MSQQRQFQTGGGNNAGQFGDTTYTKIFVGGLAWETQRETMRRYFEQFGEIHEAVVITDKNTGRSKGYGFVTFKDPDSAMRACQDPSPVIDGRRANCNLASLGAQRTRPSTTQHGMGRFRQSSGSVAPSTYQGSSSTYFHQPAHYAFPYSAYGYNSGYSQENMYSMQNYCNGYGGQQFSPYYSTAMASGSPGIFTNYYPFYSQYAESSQAQGFGIQYPQMVQYPYLPRNYGATGILSLPSVSSATTTTTVNVTGATASVAGTGSALATTQAPGTTTEQNSSA* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00120 281 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 18 105 - -
Eupl08g00120 281 SMART rrm1_1 25 97 IPR000504 GO:0003723
Eupl08g00120 281 MobiDBLite consensus disorder prediction 105 125 - -
Eupl08g00120 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 83 IPR000504 GO:0003723
Eupl08g00120 281 SUPERFAMILY RNA-binding domain, RBD 20 124 IPR035979 GO:0003676
Eupl08g00120 281 Gene3D - 1 118 IPR012677 -
Eupl08g00120 281 PANTHER BOULE-RELATED 15 252 - -
Eupl08g00120 281 CDD RRM_RBM24_RBM38_like 24 99 - -
Eupl08g00120 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00120 Eupl-Chr8 2379574 2382292 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00120 20 100 C2H2 Transcription Factor Family AT2G19380 45.679 1.71e-16 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00120 - - qsu:111994039 396.741