LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl08g00119	ATGGCGGTTGTTGAGAATGCTGGTGTTGATTTGGGGATTAATGTTGGTTCTTCGAGTCGAAATTTGGAGACAACGGCACCGGATTCGCATAGTCCGAACGATCTTGATCAAACCAATCAGAATCATTTAGGGGTTCGGATGCTCGATCCTAATTTACAACACAATAACAATAACAATAACCCAAATTTACGGTCGCAGGATCAGGCCTTTCAAATGAAGGCCCAGCAATTTCAGCAGCAGCAGCAGAGGGGGATGACGATGACAACGACGTTAACTCCCCCGGCGCACGTTAGCAACAACCACATGCCTCAGATTCAGCAGGCTCAGCACAGCCTTGACCAGGGACTAGAGAACAACGGGATGCAGAATCTGCAGGTGGGATCGATTATGACTAATGGGAAGTCTGGGTTTGGGCATGCGCAGTATCAGCGGTCGAATGGTGTCGATTTGCAGACGAACGGAGATGTCAGCGAGGGTTACAAACGGGATATGAGGGATTTGGAGGAACTTCTCTCGAAGTTGAATCCTATGGCTGAAGAATTCGTTCCGCCCTCGCTTACTAACCATGGATCAGGCGGTGGCTTTTATACTAACAACTTTGCTATGCAACATAGTTCGGGCAACGGCAATGTCAACGGAAATAACGGTAGAAGGAAGAAGAATAACTTTAGTCAAGGAAAGCGAAGAATGAACAGCCGAACGAGTATGGCACAGCGAGAAGAGGTAATTAGGAGGACTGTATATGTCTCTGACATTGATCAACAGGTTACTGAAGAACAGCTTGCCGCGCTCTTCATCAATTGTGGACATGTTGTTGACTGCCGTATATGTGGTGATCCTAATTCCGTTCTTCGTTTTGCTTTTATCGAGTTTACTGACGAGGAAGGTGCAAGGGCTGCTTTAAGTCTAGCAGGGACAATGCTTGGATTCTACCCAGTAAGGGTGCTGCCCTCGAAAACTGCCATTGCACCTGTTAACCCAACATTTTTGCCGAGGTCTGAAGATGAACGGGAGATGTGTGCGCGAACCATATATTGTACAAATATTGATAAAAAGGTTTCTCAAGCAGATGTCAAACTCTTCTTCGAATCAATCTGTGGAGAGGTTTATCGCTTGAGACTGCTCGGAGACTATCATCACTCTACCCGCATTGCTTTTGTTGAGTTCATAATGGCTGAAAGTGCAATTGCTGCTCTCAACTGTAGTGGTGTGGTGCTGGGATCCTTGCCGATAAGGGTAAGCCCGTCGAAGACACCAGTTCGACCACGTGCTCCTCGCCCAACCATGCATTGA	1293	0.471	MAVVENAGVDLGINVGSSSRNLETTAPDSHSPNDLDQTNQNHLGVRMLDPNLQHNNNNNNPNLRSQDQAFQMKAQQFQQQQQRGMTMTTTLTPPAHVSNNHMPQIQQAQHSLDQGLENNGMQNLQVGSIMTNGKSGFGHAQYQRSNGVDLQTNGDVSEGYKRDMRDLEELLSKLNPMAEEFVPPSLTNHGSGGGFYTNNFAMQHSSGNGNVNGNNGRRKKNNFSQGKRRMNSRTSMAQREEVIRRTVYVSDIDQQVTEEQLAALFINCGHVVDCRICGDPNSVLRFAFIEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCARTIYCTNIDKKVSQADVKLFFESICGEVYRLRLLGDYHHSTRIAFVEFIMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRPTMH*	431

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl08g00119	430	SMART	rrm1_1	343	414	IPR000504	GO:0003723
	Eupl08g00119	430	SMART	rrm1_1	246	316	IPR000504	GO:0003723
	Eupl08g00119	430	MobiDBLite	consensus disorder prediction	12	40	-	-
	Eupl08g00119	430	FunFam	Polyadenylate-binding protein-interacting protein 11	210	322	-	-
	Eupl08g00119	430	CDD	RRM2_CID8_like	338	419	IPR034825	-
	Eupl08g00119	430	SUPERFAMILY	RNA-binding domain, RBD	333	424	IPR035979	GO:0003676
	Eupl08g00119	430	CDD	RRM1_CID8_like	243	322	IPR034823	-
	Eupl08g00119	430	FunFam	Polyadenylate-binding protein-interacting protein 10	336	414	-	-
	Eupl08g00119	430	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	344	411	IPR000504	GO:0003723
	Eupl08g00119	430	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	247	309	IPR000504	GO:0003723
	Eupl08g00119	430	MobiDBLite	consensus disorder prediction	207	237	-	-
	Eupl08g00119	430	Pfam	Ataxin-2 C-terminal region	171	185	IPR009818	-
	Eupl08g00119	430	SUPERFAMILY	RNA-binding domain, RBD	216	321	IPR035979	GO:0003676
	Eupl08g00119	430	Gene3D	-	329	424	IPR012677	-
	Eupl08g00119	430	Gene3D	-	200	322	IPR012677	-
	Eupl08g00119	430	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	342	418	IPR000504	GO:0003723
	Eupl08g00119	430	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	245	320	IPR000504	GO:0003723
	Eupl08g00119	430	PANTHER	SERINE/ARGININE-RICH SPLICING FACTOR	169	423	-	-
	Eupl08g00119	430	MobiDBLite	consensus disorder prediction	1	40	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl08g00119	Eupl-Chr8	2360957	2378158	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl08g00119	244	406	Eukaryotic Initiation Factors Gene Family	AT1G34140	25.150	2.84e-09	57.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl08g00119	-		-	nnu:104593733	629.787