Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00112 ATGAGTGGTCGTTCTGCTCGCACTATCTATGTTGGCAACCTGCCCTCAGATATACGAGAAGGGGAAATTGAAGATCTATTTTACAAGTATGGTCGTATAGTTGATATTGAGCTGAAGATCCCACCTCGCCCTCCTGGTTATTGTTTTGTGGAGTTTGAAGATGCGCGGGATGCTGAAGATGCAATCAGGGGTCGAGATGGCTATAATTTTGATGGTTGTCGTTTAAGGGTTGAGCTTGCCCATGGTGGTAGAGGGCAGTCATCTTCAACTGATCGTCGAGGTGGAGGCGGAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGACGATTTGGTGGCGTTTCACACCGTTCTGAATATCGAGTTGTTATTCGTGGACTGCCTTCTTCTGCTTCATGGCAAGATTTGAAGGATCACATGCGGAAGGCTGGTGATGTTTGTTATGCCCAAGTTTTCCGTGACGGCGCTGGAACCATGGGTCTGGTAGACTATACTAATTATGATGACATGAAATATGCTATTCGGAAACTCAATGACACTGAGTTTAGAAATCCTTTTTCAAAGGCATATATTCGGGTGAAGACCTATGAAAGCAGTGAGTCAAGTAGCCGTAGCCGAAGTAGGAGCCGCAGTAGAAGCAGAAGTGTAGGAAGAAAGCGGAGCAAGTCATTGGAACGATCTGTTTCTAGATCGGCATCAAAATCTAGATCTGCATCAAGATCTAAATCTGCATCTCCCACCAGATTGTCCAGGTCAAGATCAGGCTCACCCCGCCAGGCACGGTCGGGTAGTGGCTGA 795 0.4767 MSGRSARTIYVGNLPSDIREGEIEDLFYKYGRIVDIELKIPPRPPGYCFVEFEDARDAEDAIRGRDGYNFDGCRLRVELAHGGRGQSSSTDRRGGGGGGGGGGGGGGGRFGGVSHRSEYRVVIRGLPSSASWQDLKDHMRKAGDVCYAQVFRDGAGTMGLVDYTNYDDMKYAIRKLNDTEFRNPFSKAYIRVKTYESSESSSRSRSRSRSRSRSVGRKRSKSLERSVSRSASKSRSASRSKSASPTRLSRSRSGSPRQARSGSG* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00112 264 Gene3D - 118 196 IPR012677 -
Eupl08g00112 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Eupl08g00112 264 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 7 261 - -
Eupl08g00112 264 Gene3D - 2 115 IPR012677 -
Eupl08g00112 264 FunFam serine/arginine-rich splicing factor SR34A-like 2 118 - -
Eupl08g00112 264 SUPERFAMILY RNA-binding domain, RBD 6 184 IPR035979 GO:0003676
Eupl08g00112 264 SMART rrm1_1 120 193 IPR000504 GO:0003723
Eupl08g00112 264 SMART rrm1_1 8 78 IPR000504 GO:0003723
Eupl08g00112 264 CDD RRM2_SF2_plant_like 119 193 - -
Eupl08g00112 264 CDD RRM1_SF2_plant_like 8 79 - -
Eupl08g00112 264 MobiDBLite consensus disorder prediction 81 110 - -
Eupl08g00112 264 MobiDBLite consensus disorder prediction 194 264 - -
Eupl08g00112 264 MobiDBLite consensus disorder prediction 229 264 - -
Eupl08g00112 264 FunFam serine/arginine-rich splicing factor SR34A-like 119 196 - -
Eupl08g00112 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 197 IPR000504 GO:0003723
Eupl08g00112 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Eupl08g00112 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 183 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00112 Eupl-Chr8 2232071 2240845 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00112 8 177 Eukaryotic Initiation Factors Gene Family AT4G34110 24.432 6.92e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00112 K12890 - nnu:104593794 336.265