Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00111 ATGTCGGTAGGAGAGATCGCCTGCACTTACGCTACTTTGATTCTCCAGAACGATGGGATTGCCGTCACTGCGGAGAAGATCGCTACGTTGGTAAAATCGGCTAACGTGACGGTCGAGTCGTACTGGCCGAGCCTCTTCACCAAGTTTGTGGAGAAGAGGAACATTGAAGATCTTATCATGAACGTCGGTTCCGGTGGAGGAGGTGCTCCTGCTGCTGTTGCTGCCCCATCTGGTGGCGGTGCTGGTCCCGCTGCGGCTGCTGCACCTGTAGCTGAGGAAAAGAAGGAAGAAGCAAAGGAAGAGAGTGATGATGACATGGGATTCAGCCTGTTTGATTAG 339 0.531 MSVGEIACTYATLILQNDGIAVTAEKIATLVKSANVTVESYWPSLFTKFVEKRNIEDLIMNVGSGGGGAPAAVAAPSGGGAGPAAAAAPVAEEKKEEAKEESDDDMGFSLFD* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00111 112 Pfam 60s Acidic ribosomal protein 22 111 - -
Eupl08g00111 112 Hamap 50S ribosomal protein L12 [rpl12]. 6 112 IPR027534 GO:0003735|GO:0005840|GO:0006414
Eupl08g00111 112 Gene3D - 1 63 IPR038716 -
Eupl08g00111 112 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 112 - -
Eupl08g00111 112 FunFam 60S acidic ribosomal protein P1 1 63 - -
Eupl08g00111 112 MobiDBLite consensus disorder prediction 90 106 - -
Eupl08g00111 112 MobiDBLite consensus disorder prediction 67 112 - -
Eupl08g00111 112 CDD Ribosomal_P1 5 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00111 Eupl-Chr8 2228765 2230003 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00111 1 112 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 59.130 1.92e-41 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00111 K02942 - egt:105963624 130.954