Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00088 ATGATAAAGCTTGTGACGGACCTACTAAACCTGCTAGCCCATGTCAAGTTCATGCTTATGATGGCACTCTTTCGTCTGGGACGACTATTCTGTCGACATGATCAAGTGAATTCCGAAGAACGACATCATGTTCATGACATCGTTTCTTCGTCGATGAACCGTCCTTCTCCAGCGTTGGTTCCAGTTCCAGTGACATTGAATCCTAGTATGTTGGAGCCAATCAAGAAGAGGCTTCGAGTAGTAGAATTTGGTGAGTTTTTGGAGAGATCGGGAGTAGGCGAAGACTACCTGCTAGCCCATCACAAGTTCATGGTTATGATGGCACTCTTTCCTCTGAGACAATCCAGTCCACCTGATCAAGTGTATTTTCCAGGACATCACGCAGACGACGTTGTTTCATCCTCGATGAAACTCCCTTCTCCGCCGTTGGTCCCAGCCGCCCCTCATGTTCGCCTTAAAGTGATGACAAAGCTTGTAACAGGCCTGGTAAATCTGCTAGCCCATGTCAAGTTCATGGTTATGGTGGTACTCTTTCGTCTCAGTCGACATGATCAAGTGTATTCTCAAGAACATCATGTCGATGGCGTGGTTTCTTCGTCGATGAACCGTCCTTCTCCAGCGTTGGTCCCAGTTCCAGTAACATTGAATCCTAGTATGTTGGAGCCAATCAAGAATAGGCTTCGAGTAGTAGAATTTGGTGATTTTGTGGAGAGATCGGGAGTAGGCGACGACTGTGAGCCGGTTTGCGCCTTGTGTTTGTGTTGCTTGGAGAGAAAAGATGAGATGAGGGAGCTATCAAATTGTTCTCATGCGTTTCATAGAGAGTGCTTGGATAAGTGGGTTGATCAAAGTAAGGGGAATGGATTTTCTCTGGAGCAACACTTGAAACTTGACATCGGAGTGGCAAGGTAA 912 0.4649 MIKLVTDLLNLLAHVKFMLMMALFRLGRLFCRHDQVNSEERHHVHDIVSSSMNRPSPALVPVPVTLNPSMLEPIKKRLRVVEFGEFLERSGVGEDYLLAHHKFMVMMALFPLRQSSPPDQVYFPGHHADDVVSSSMKLPSPPLVPAAPHVRLKVMTKLVTGLVNLLAHVKFMVMVVLFRLSRHDQVYSQEHHVDGVVSSSMNRPSPALVPVPVTLNPSMLEPIKNRLRVVEFGDFVERSGVGDDCEPVCALCLCCLERKDEMRELSNCSHAFHRECLDKWVDQSKGNGFSLEQHLKLDIGVAR* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00088 303 PANTHER RING ZINC FINGER PROTEIN-RELATED 169 282 - -
Eupl08g00088 303 Pfam Ring finger domain 249 284 IPR001841 -
Eupl08g00088 303 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 232 287 IPR013083 -
Eupl08g00088 303 SUPERFAMILY RING/U-box 248 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00088 Eupl-Chr8 1905557 1912640 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00088 221 288 C3H Transcription Factor Family AT3G43430 47.143 2.37e-13 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00088 - K16281 nnu:104586568 120.553