Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00087 ATGCCAAAATTTTCAACATACCTACTAAACCTTCTAACCCATATCAAGTTCATGGTTATGGTAGCACTCTATCGCCTGAGTCCATCCCGTCCGTCCGATCAACTGGAGAGTCGGGATCATCATGTCAACGTCCCTTCGCCGGCATCAGTTCCAGTCCCAGTAATATTAAGTCCTAATATGTTGGAGCCAATCAAGAAGAGGCTTCCAGTGGTACAACTTGCTGATCTTCTTGAGAGATGGGGAGTAGGCAAAGACTTGGAGCTGGTTTGCACCGTGTGCTTGAGTTGCTTGGAGAGAAGTGACGAGATCAGAGAGCTATCAAATTGTTGCCATGTGTTTCATAGGGAGTGCTTGGATAAGTGGGTTGATCAATGTAAGGCGACGTGTCCTTTGTGTAGAAGTAAGCTACTGCCCTCTCAAGGAGAGGGAGGAGATCCATGGATGGTGGAGAGGATGTATTACCTTTTTGGTGAGGATTGGTGA 483 0.4679 MPKFSTYLLNLLTHIKFMVMVALYRLSPSRPSDQLESRDHHVNVPSPASVPVPVILSPNMLEPIKKRLPVVQLADLLERWGVGKDLELVCTVCLSCLERSDEIRELSNCCHVFHRECLDKWVDQCKATCPLCRSKLLPSQGEGGDPWMVERMYYLFGEDW* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00087 160 SUPERFAMILY RING/U-box 89 143 - -
Eupl08g00087 160 PANTHER RING ZINC FINGER PROTEIN-RELATED 27 140 - -
Eupl08g00087 160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 138 IPR013083 -
Eupl08g00087 160 ProSiteProfiles Zinc finger RING-type profile. 90 133 IPR001841 -
Eupl08g00087 160 SMART ring_2 90 132 IPR001841 -
Eupl08g00087 160 Pfam Ring finger domain 90 133 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00087 Eupl-Chr8 1902136 1902618 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00087 62 159 C3H Transcription Factor Family AT3G43430 45.455 6.23e-23 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00087 - K16281 nnu:104593333 151.754