Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00081 ATGGAGAGGCTCCACCAAGGACCCATCAACCACTGCTTCTTTGGAGATCATTTGAATGTGGAGTGTTTGGAACAAGGAGGGAGTGCTTTGGATTTCAGTAATGGGCCGTCTATAAATACAAATAGCTTGAGATTTGAGGAACAAAAACAAACATCCTTTTTAAATCCAAGCTTACGAGACAAAATTCCGTTTCTTCAGATGCTACAAAGCTTTGAATCCCCTCCATTTCCTCCATTTACAGAACCCAACTTTCAGGTACTCTTGAGATTGCAGCAGCAAAACAGGAAGATGGACACTCGGATTCAAGCACAGGAGCTCGAAAGCTGCATAACCCATGACACATCGGAGACGCATTCGCCGGTTAAATCCGAAACCAAGGAGCCACAATACCCACATTCGTCGTCGTGTCCGAAGATTGTGAGCTCTGTATACAATCAAGAACCCAATTCACTAGAGAATCGCAGGGACCGGAACTCAGGGTTGTCGACGACATGGGTTCAAAATCAAACTAGACCAAAACTGATGACCCAATTCCCTAAACCTCTCCCAATTGCTCAGGAGAGAAGAAAGCGAAAGCGAACGAAACTTAACAAGAACAGAGATGAGATGGAGAACCAACGAATGACCCACATTGCCGTCGAACGCAACCGGAGAAGGCAAATGAACGACCACCTCAACGAGCTCCGGTCCCTCATGCCCACTTCATTCATTCAAAGAGGTGACCAAGCTTCGATTATTGGAGGTGCGATCGACCTTGTGAAAGAATTGGAGCAAATGTTACAATCTCTCCAAGCCGAAAAGAAAATGCGGATGTCCAAAGAGAAATGCGACAAGCCCGACGCTTTAGTCCCATTCAATGGTTTCTTTACATCACCGCAATACACAACTTACTCATCGTTGTTGTCGTCGTCAAGTTCCGATTTCAAGTACTTTGTCGATGACAATACTAATTATATGGGTGGAGTGAGACGTGATGAATTCAATGGGAACAAGTCCGCGGTGGTGGCCGACATCGAAGTATCGGTGATCCAAACACATGTGAACCTCAAAATTCTGTCTTCAAGAAGGCCAGGACAGCTTCTCAAAGCCATTGCTGCTTTAGAAGATCTGAGACTAACCATCTTACACCTTAATGTTACTTCCTTAGAACGCTCAGTTCTCTATTCTTTCAATCTCAAGATAGAAGATGAGTGTAAGCTTGGATCAGCTGAAGAGATTGCAAAAGCAGTTCATCAAATTTTCAGCTACATCAACGGCAACTGA 1263 0.445 MERLHQGPINHCFFGDHLNVECLEQGGSALDFSNGPSINTNSLRFEEQKQTSFLNPSLRDKIPFLQMLQSFESPPFPPFTEPNFQVLLRLQQQNRKMDTRIQAQELESCITHDTSETHSPVKSETKEPQYPHSSSCPKIVSSVYNQEPNSLENRRDRNSGLSTTWVQNQTRPKLMTQFPKPLPIAQERRKRKRTKLNKNRDEMENQRMTHIAVERNRRRQMNDHLNELRSLMPTSFIQRGDQASIIGGAIDLVKELEQMLQSLQAEKKMRMSKEKCDKPDALVPFNGFFTSPQYTTYSSLLSSSSSDFKYFVDDNTNYMGGVRRDEFNGNKSAVVADIEVSVIQTHVNLKILSSRRPGQLLKAIAALEDLRLTILHLNVTSLERSVLYSFNLKIEDECKLGSAEEIAKAVHQIFSYINGN* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00081 420 Coils Coil 87 107 - -
Eupl08g00081 420 Gene3D - 201 278 IPR036638 GO:0046983
Eupl08g00081 420 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 205 256 IPR011598 GO:0046983
Eupl08g00081 420 Pfam Helix-loop-helix DNA-binding domain 206 257 IPR011598 GO:0046983
Eupl08g00081 420 Coils Coil 186 206 - -
Eupl08g00081 420 PANTHER TRANSCRIPTION FACTOR FAMA 124 414 IPR044283 GO:0003700|GO:0010052
Eupl08g00081 420 SMART finulus 211 262 IPR011598 GO:0046983
Eupl08g00081 420 Coils Coil 246 273 - -
Eupl08g00081 420 MobiDBLite consensus disorder prediction 126 175 - -
Eupl08g00081 420 MobiDBLite consensus disorder prediction 109 201 - -
Eupl08g00081 420 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 204 270 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00081 Eupl-Chr8 1819550 1822159 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00081 55 419 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G01460 42.466 4.44e-66 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl08g00081 HLH 3.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00081 - - vvi:100248794 461.07