Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00070 ATGGAGGAAACTAGGGTTTCTGGAAGTATTGGCGACGAACAGTCTCGTTCGCCTGATGCTAGGGCTTCTTACTGGCTAGATGCCTGTGAGGATGTCTCTTGTGAACTTATGAACGATATTGTTGATTTTGAATCGGTTGCTCCGGAAATAGTTGAGGATTCTTCGAATCAGAATGTTGATGCTTGTTTCTTTGGGGGAATTGATCGAATTCTGGAAAGTATTAAGAATGGTGGTGGTTTACCGCCTAATGTGGAGACGGAAAATGGGATTGGAAGTGAAATTGTGGGGGATGTTAGACCTGAGAATGTGGTGGTGGCTGGATGCATGATACAAGTAGAGGAGTTGAATCGGACGGTGGAAAAAGATGATCTTGCTAGAAGAGAATTGAAAACTGATCGGGATTGTGACATTGGTGAAATTGATAAACATTGTGAAGTTATGCGTGAGAAGAAATTATTGAATGGTACATGCCATGGGGGGGAAATGTCTCTGGAGGAAAATGGAGTAGTTAAGTATGAAAGTTTGGATAATGAGGTTAGGAGAGACATGGACGTTGATAGTAGAGAAAGATACAGCAAAAGGAATCGTCTTAGCGACTGCAATGAGGGGAGGAATTACTCAGGCAGCTGGCACGATCAATCCAGGGAACGGTCGAGCAAGAAGAGGCCCCGCGAAAGGGAAGAGACTGAAAGGAGGGAAAGGGATCGAAGCAGTAAAAGAGAACGTTACAGTAATGATAGGAGGGACAGTAGGGATCGGGATTGGAGAGAGAGAGAAAGAAGAGGTTATTGGGAGAGGGACCGATCGGGGAAGGTCATTTTTCACGTCGGTTCTTGGGAGGTTGAACATAACAGAGAGGCAAAGAGAGCCAAGGAAGAAAACGCAGAGCGGGTTGGGAGCCCTGAGAAGAAACCTGATGAGAAGAAAGAGAAACCAGCGGAGGAGCAGGCCAGGAAATACCAGTTGGACGTTCTTGAGCAGGCGAAGAAGAAGAATACAATAGCTTTTCTTGAGACAGGAGCAGGGAAGACACTCATAGCTGTTCTCCTTATCAAGAGCATTTGCAATGATATGCTCCGGGAGAATAAGAAAATGCTGGCTATATTTTTGGTGCCTAAGGTTCCTCTTGTTTATCAGCAAGCAGAAGTTATTCGTGAGAGAACTGGTTACAAAGTAGGACATTATTGTGGTGAAATGGGTCAAGATTTCTGGGATGCTCGCAGGTGGCAGCGTGAGTTTGAATCAAAACAGGTTCTAGTAATGACAGCTCAAATTCTGTTGAACATTCTCAGGCACAGCATAATAAAAATGGAAGCCATCCATCTTCTTATTCTGGACGAATGTCATCATGCTGTAAAGAAACATCCATATTCATTAGTGATGTCTGAGTTCTATCATACAACTCCAAAAGAGAAGAGACCAGCTGTATTTGGGATGACGGCTTCTCCTGTAAACTTGAAGGGTGTTTCCAGTCAAGAGGATTGTGCTATAAAGATTCGGAATCTTGAAAGCAAACTAGATTCCATCGTTTGTACAATAAAAGACCGTAAGGAGCTGGAAAAACATGTTCCAATGCCCTCAGAAGTTGTGGTTGAGTACGACAAAGCAGCTAGCTTGTGGTCCCTTCATGAACAAATAAAACAAATGGAATTGGCAGTTGAAGAAGCTGCACATTCCAGTTCCAGAAGAAGTAAATGGCAATTTATGGGGGCTAGAGATGCTGGGTCCAGAGAAGAGCTACGTCTTGTTTATGGTGTATCTGAAAGAACAGAAAGTGATGGAGCTGCTAATCTAATTCAAAAGTTGAGGGCTATTAACTATGCTCTGGGTGAACTGGGACAGTGGTGTGCTTACAAGGTTGCACATTCATTTTTGACAGCCTTACAGAATGACGAAAGGGCAAATTACCAACTTGATGTCAAGTTTCAAGAATCATACTTGAATAAAGTTGTATCTCTCCTTCAATGCCAGTTGTCTGAGGGAGCTGTTTCTGATAAGGATGCAAAAGGTATAGATGAGGAGAGTGGCTGTGCTGAAGGTGAATGTGACCTTGATGAAATTGAGGAGGGGGAGCTCCCTGACAGTCACGTTGTCTCTGGTGGAGAGCATGTGGATGTGATAATAGGAGCAGCTGTAGCTGATGGAAAGGTGACCCCCAAAGTTCAATCATTGATTAAAATACTTCTTCGGTATCAACACACAGAGGATTTTCGTGCGATCGTCTTTGTGGAGCGCGTAGTGGCTGCCTTAGTTCTTCCGAAGGTGTTTGCGGAGCTTCCATCTCTAAGTTTTGTCAAGTGTGCAAGTTTGATCGGACACAATAATAGTCAGGAAATGCGTACATCCCAAATGCAAGACACAATAGCCAAATTTCGCGATGGCCGAGTGACATTATTAGTAGCCACTAGTGTTGCAGAAGAAGGACTCGATATACGGCAATGCAATGTTGTTATTCGCTTTGACCTTGCAAAAACTGTTTTGGCATATATTCAGTCTAGGGGCCGTGCAAGGAAGCCAGGGTCTGATTACATATTGATGGTTGAGAGGGGAAATTTGTCTCATGAAACCTTCCTAAGGAATGCTAGGAATAGCGAGGAAACCTTGCGTAAGGAAGCGATAGAGAGGACTGACCTTAGCCATCTTACGGGTTCTTCAAGGTTAACTACTGTGGATACAACACCAGGTACAGTGTACCAGGTGGAGTCAACTGGTGCTATTGTGAGCCTAAATTCTGCAGTTGGACTCATCCATTTCTACTGCTCCCAGCTACCTAGTGACAGGTATTCTATACTTCGTCCTGAGTTTATTATGGAACGACATGAGAAGCCGGGGGGTTCCACTGAATATTCGTGCAAGCTTCAGCTTCCCTGCAACGCACCATTTGAAAAGCTCGAGGGTCCTGTGTGCAGTTCAATGCGCCTTGCACAACAGGCTGTTTGTTTGGCTGCTTGCAAGAAGCTTCATGAGATGGGGGCATTTACTGACATGCTCTTGCCAGACAAGGGTAGTGGGGAAGAAGGAGAGAAGGTTGACCAGAATGATGAAGGAGATCCACTCCCTGGAACCGCAAGGCATAGAGAATTCTATCCTGAAGGTGTTGCTGAAATTCTTCAGGGAGAATGGATTTTATCTGGGAGAGATGGTTGCCACAACTCAGACTTGGTTAATCTGTATATGTATTCTGTAAAATGTGTAAACATCGGCAGTTCAAAAGACTCGTTCGTAACGCAAGTTTCAGATTTCGCAGTACTTTTTGGCAGTGAGCTGGATGCAGAGGTTTTATCGATGTCGATGGATCTCTTTGTTGCTCGAACCATGATAACAAAGGCATCTCTCGTCTTCCGGGGATCCGTAGATATTCCGGAGAGTCAGCTGGTCTCCCTGAAGAGCTTTCATGTGAGACTTATGAGCATTGTGCTGGATGTGGATGTTGAACCTTCCAGCACTCCGTGGGATCCTGCAAAGGCATACTTATTTGTCCCCGTGATTGGTGAGAAGTGTGTAGATCCTATAAAAGAAATTGACTGGGTTCTAGTTGAAAAGATAATTGGGACAGATGCATGGAGCAATCCCCTTCAGAGGGCTCGTCCAGATGTTTACCTTGGTACAAATGAGCGAACTCTGGGTGGAGACCGGAGGGAGTATGGATTTGGAAAATTGCGCCATGGCATGGCTTTTGGACAAAAATCCCATCCCACATATGGTATCAGAGGGGCTGTCGCACAGTTTGATGTTGTGAAGGCTTCTGGATTGGTTCCTCATCGGGATGACATGGAAAACCAGAACAATGAGGATGTGACCCAAGGCAAATTGCTGATGGCTGATTCATGCATTGATGCAGAAGAGCTTGTGGGAAGGATTGTGACTGCTGCTCACTCTGGAAAGAGATTTTATGTGGATTCTGTGCGCTATGATATGAATGCAGAGAACTCATTCCCAAGGAAGGAGGGCTACTTAGGTCCTTTGGAGTACAGCTCATATGCTGATTACTACAGGCAAAAATATGGAGTGGAACTTATGTATAAAAAACAACCTCTCATAAGAGGACGTGGTGTTTCATATTGCAAGAATCTCCTGTCTCCTCGATTTGAGCATTCTGAGGCACATGAAGGTGAGTCTGAAGAGACTCTCGACAAGACATACTATGTCTTCTTGCCTCCTGAGCTATGTTTTGTACATCCACTTCCGGGGTCACTTGTTCGAGGTGCCCAGCGGTTGCCTTCAATAATGAGGAGGGTTGAAAGTATGCTTCTTGCTGTTCAGCTGAAGGAGACAATTAATTATGCTGTCCCTGCTTCCAAGATCTTGGAAGCCTTGACTGCTGCATCATGCCAGGAGACATTCTGTTATGAAAGAGCGGAGTTACTGGGAGATGCTTACCTGAAGTGGGTTGTTAGTAGATTCCTTTTTCTCAAATACCCTCAGAAACATGAGGGTCAGCTTACCAGGATGAGGCAACAGATGGTCAGTAACATGGTTCTGTATCACTTTGCACTGAGCAAAGGACTCCAATCATATATCCAAGCTGATCGCTTTGCTCCATCTAGATGGGCTGCTCCTGGGGTGCTGCCTGTCTTTGACGAGGATACCAAGGAAACAGAATCATCTTTATTTGGTAGGGAAAACTCCTCTTCTGAGACTGAATCACGAAAGAGTTTCTATGATGATGGGTATGAAGATGACAATATGGAAGATGGCGAGGTCGAGAGTGATTCGAGCTGTTACAGAGTTCTCTCTAGCAAGACACTGGCAGATGTTGTTGAGGCATTGATTGGGGTGTATTATGTTGAAGGTGGGAAGAATGCTGCAAACCACATCATGAAATGGATTGGGATTCAGGTGGAGTTTGATCCTAAAGAGGTAGAGTGCACAAACAAGCCATGCAATGTTCCCGAGAGCATACTAAGGAGTGTCAATTTTGATGCTTTAGAAGGTGCCTTGAATATTAAGTTTAAAGATAGAGGCCTGTTGGTGGAAGCTATTACACATGCTTCACGGCCTTCGTCCGGAGTCTCCTGTTACCAACGACTGGAGTTTGTTGGTGATGCTGTATTGGATCATCTAATTACAAGGCACTTGTTCTTTACGTACACGGATCTACCCCCTGGCCGCTTGACAGACTTGCGAGCTGCTGCGGTAAACAATGAAAACTTTGCGCGTGTCGCGGTAAAGCACAAGCTCCATGTGCACCTTCGGCATGGATCAAGTGCCCTTGAAGCACAGATTCGGGACTTTGTGAAAGATGTTCAGGATGAATTGTTGAAACCGGGGTTTAATTCCTTTGGTTTGGGAGATTGCAAAGCTCCCAAAGTACTTGGTGATATTGTTGAATCCATTGCTGGTGCAATTTTTCTTGACGGCGGACGTGATACTGCCGTTGTCTGGAGGGTGTTCCAACCTTTGTTACATCCAATGGTGACTCCAGAAACGCTTCCTATGCATCCGGTCAGGGAGCTTCAAGAGCGTTGCCAACAACAGGCTGAAGGTTTGGAGTACAAAGCTACTCGGAGTGGCAATCTGGCTACTGTTGAGGTCTATATTGATGGTGTCCAGATTGGGATTGCTCAGAACCCACAAAAGAAAATGGCTCAGAAATTAGCAGCGAGGAATGCACTCGTTGTTTTGAAAGAGAAGGAAAGAGCTGATGCCAAGGAGAATGGCGAGGAGAATGGGAAGAAGAAGAATGGCACTCAAACATTCACTAGACAGACACTTAATGATATCTGCTTGCGGAGGCAGTGGCCGATGCCTCAGTACAGGTGTATAAATGAAGGTGGCCCTGCTCATGCGAAGAGATTTACATATTCTGTACGCGTGAATACTACTGACAAGGGATGGACGGATGATTGCGTGGGGGATCCTATGCCTAGTGTTAAGAAGGCCAAGGACTCCGCTGCTGTTCTTCTCTTGGAGCTTCTAAATAGATGGTATGCACATTCGTGA 5943 0.4513 MEETRVSGSIGDEQSRSPDARASYWLDACEDVSCELMNDIVDFESVAPEIVEDSSNQNVDACFFGGIDRILESIKNGGGLPPNVETENGIGSEIVGDVRPENVVVAGCMIQVEELNRTVEKDDLARRELKTDRDCDIGEIDKHCEVMREKKLLNGTCHGGEMSLEENGVVKYESLDNEVRRDMDVDSRERYSKRNRLSDCNEGRNYSGSWHDQSRERSSKKRPREREETERRERDRSSKRERYSNDRRDSRDRDWRERERRGYWERDRSGKVIFHVGSWEVEHNREAKRAKEENAERVGSPEKKPDEKKEKPAEEQARKYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIKSICNDMLRENKKMLAIFLVPKVPLVYQQAEVIRERTGYKVGHYCGEMGQDFWDARRWQREFESKQVLVMTAQILLNILRHSIIKMEAIHLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPAVFGMTASPVNLKGVSSQEDCAIKIRNLESKLDSIVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQIKQMELAVEEAAHSSSRRSKWQFMGARDAGSREELRLVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAHSFLTALQNDERANYQLDVKFQESYLNKVVSLLQCQLSEGAVSDKDAKGIDEESGCAEGECDLDEIEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLRYQHTEDFRAIVFVERVVAALVLPKVFAELPSLSFVKCASLIGHNNSQEMRTSQMQDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHETFLRNARNSEETLRKEAIERTDLSHLTGSSRLTTVDTTPGTVYQVESTGAIVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGSTEYSCKLQLPCNAPFEKLEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGEEGEKVDQNDEGDPLPGTARHREFYPEGVAEILQGEWILSGRDGCHNSDLVNLYMYSVKCVNIGSSKDSFVTQVSDFAVLFGSELDAEVLSMSMDLFVARTMITKASLVFRGSVDIPESQLVSLKSFHVRLMSIVLDVDVEPSSTPWDPAKAYLFVPVIGEKCVDPIKEIDWVLVEKIIGTDAWSNPLQRARPDVYLGTNERTLGGDRREYGFGKLRHGMAFGQKSHPTYGIRGAVAQFDVVKASGLVPHRDDMENQNNEDVTQGKLLMADSCIDAEELVGRIVTAAHSGKRFYVDSVRYDMNAENSFPRKEGYLGPLEYSSYADYYRQKYGVELMYKKQPLIRGRGVSYCKNLLSPRFEHSEAHEGESEETLDKTYYVFLPPELCFVHPLPGSLVRGAQRLPSIMRRVESMLLAVQLKETINYAVPASKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYHFALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKETESSLFGRENSSSETESRKSFYDDGYEDDNMEDGEVESDSSCYRVLSSKTLADVVEALIGVYYVEGGKNAANHIMKWIGIQVEFDPKEVECTNKPCNVPESILRSVNFDALEGALNIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALEAQIRDFVKDVQDELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDGGRDTAVVWRVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYKATRSGNLATVEVYIDGVQIGIAQNPQKKMAQKLAARNALVVLKEKERADAKENGEENGKKKNGTQTFTRQTLNDICLRRQWPMPQYRCINEGGPAHAKRFTYSVRVNTTDKGWTDDCVGDPMPSVKKAKDSAAVLLLELLNRWYAHS* 1981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00070 1980 CDD DEXHc_dicer 316 515 - -
Eupl08g00070 1980 MobiDBLite consensus disorder prediction 183 200 - -
Eupl08g00070 1980 FunFam endoribonuclease Dicer homolog 1 1906 1975 - -
Eupl08g00070 1980 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1900 1973 - -
Eupl08g00070 1980 SMART PAZ_2_a_3 1255 1418 IPR003100 GO:0005515
Eupl08g00070 1980 Gene3D Ribonuclease III domain 1637 1811 IPR036389 GO:0004525|GO:0006396
Eupl08g00070 1980 FunFam Endoribonuclease Dicer 1 1274 1392 - -
Eupl08g00070 1980 SMART helicmild6 753 839 IPR001650 -
Eupl08g00070 1980 Gene3D - 710 876 IPR027417 -
Eupl08g00070 1980 SMART DRBM_3 1815 1876 IPR014720 -
Eupl08g00070 1980 SMART DRBM_3 1901 1974 IPR014720 -
Eupl08g00070 1980 Pfam Helicase conserved C-terminal domain 720 837 IPR001650 -
Eupl08g00070 1980 MobiDBLite consensus disorder prediction 1001 1024 - -
Eupl08g00070 1980 FunFam Endoribonuclease dicer-like protein 1416 1611 - -
Eupl08g00070 1980 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 724 884 IPR001650 -
Eupl08g00070 1980 FunFam Endoribonuclease dicer-like protein 312 552 - -
Eupl08g00070 1980 ProSiteProfiles Ribonuclease III family domain profile. 1437 1599 IPR000999 GO:0004525|GO:0006396
Eupl08g00070 1980 CDD RIBOc 1433 1619 IPR000999 GO:0004525|GO:0006396
Eupl08g00070 1980 SUPERFAMILY RNase III domain-like 1633 1806 IPR036389 GO:0004525|GO:0006396
Eupl08g00070 1980 FunFam Endoribonuclease dicer-like 1 907 1008 - -
Eupl08g00070 1980 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1814 1877 IPR014720 -
Eupl08g00070 1980 ProSiteProfiles PAZ domain profile. 1252 1394 IPR003100 GO:0005515
Eupl08g00070 1980 ProSiteProfiles Ribonuclease III family domain profile. 1640 1788 IPR000999 GO:0004525|GO:0006396
Eupl08g00070 1980 Pfam Ribonuclease III domain 1675 1788 IPR000999 GO:0004525|GO:0006396
Eupl08g00070 1980 Pfam Ribonuclease III domain 1451 1599 IPR000999 GO:0004525|GO:0006396
Eupl08g00070 1980 SUPERFAMILY dsRNA-binding domain-like 1770 1886 - -
Eupl08g00070 1980 SMART riboneu5 1655 1811 IPR000999 GO:0004525|GO:0006396
Eupl08g00070 1980 SMART riboneu5 1433 1619 IPR000999 GO:0004525|GO:0006396
Eupl08g00070 1980 MobiDBLite consensus disorder prediction 284 316 - -
Eupl08g00070 1980 CDD RIBOc 1656 1811 IPR000999 GO:0004525|GO:0006396
Eupl08g00070 1980 MobiDBLite consensus disorder prediction 209 252 - -
Eupl08g00070 1980 PANTHER DICER-RELATED 1273 1880 - -
Eupl08g00070 1980 CDD SF2_C_dicer 717 847 - -
Eupl08g00070 1980 Gene3D - 1906 1975 - -
Eupl08g00070 1980 Pfam Double-stranded RNA binding motif 1815 1873 IPR014720 -
Eupl08g00070 1980 Gene3D - 312 555 IPR027417 -
Eupl08g00070 1980 Pfam Dicer dimerisation domain 912 1000 - -
Eupl08g00070 1980 MobiDBLite consensus disorder prediction 1533 1568 - -
Eupl08g00070 1980 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 324 501 IPR014001 -
Eupl08g00070 1980 Pfam Type III restriction enzyme, res subunit 312 483 IPR006935 GO:0003677|GO:0005524|GO:0016787
Eupl08g00070 1980 Gene3D Ribonuclease III domain 1415 1612 IPR036389 GO:0004525|GO:0006396
Eupl08g00070 1980 SUPERFAMILY dsRNA-binding domain-like 1904 1974 - -
Eupl08g00070 1980 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 912 1007 IPR005034 GO:0016891
Eupl08g00070 1980 SMART ultradead3 313 516 IPR014001 -
Eupl08g00070 1980 SUPERFAMILY PAZ domain 1270 1394 IPR036085 GO:0005515
Eupl08g00070 1980 CDD DSRM_DCL_plant 1906 1975 - -
Eupl08g00070 1980 Pfam PAZ domain 1261 1414 IPR003100 GO:0005515
Eupl08g00070 1980 Gene3D Dicer dimerisation domain 907 1008 IPR038248 -
Eupl08g00070 1980 MobiDBLite consensus disorder prediction 183 252 - -
Eupl08g00070 1980 SUPERFAMILY RNase III domain-like 1410 1617 IPR036389 GO:0004525|GO:0006396
Eupl08g00070 1980 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 364 851 IPR027417 -
Eupl08g00070 1980 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1900 1975 IPR014720 -
Eupl08g00070 1980 ProSitePatterns Ribonuclease III family signature. 1675 1683 IPR000999 GO:0004525|GO:0006396
Eupl08g00070 1980 Gene3D - 1812 1891 - -
Eupl08g00070 1980 CDD PAZ_CAF_like 1248 1396 - -
Eupl08g00070 1980 Gene3D paz domain 1261 1400 - -
Eupl08g00070 1980 FunFam Endoribonuclease dicer-like 1 1635 1809 - -
Eupl08g00070 1980 FunFam Endoribonuclease dicer-like 1 711 873 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00070 Eupl-Chr8 1659041 1673514 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00070 736 879 Eukaryotic Initiation Factors Gene Family AT5G11200 28.571 1.74e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00070 K11592 - nnu:104585774 3287.28