Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00064 ATGGAGTTTGTGCAAGGAAAAGAAGGGTATTGTGAGGAAGACGAGGAAATGATTGGGGATATGGGTAAGTTCCTTTTCGCTTCTTCATCTTCCTTCTCTCCTTCTTCTTATCAGTACAAAGGCGTCCTTCCTCAGCCGAACGGACGATGGGGAGCACAGATTGACGAGAATCAACAAAGGTCGTCGTTGGGGAGTTTCGAATCAGAAGAAGGAGCTGCTCTTCAGTTCCATGGCCATGAGGTTGTTACCAATTTCAACCAGAAGGTTGAGCTCATGAACTTTTTGCCAAGGAATAACGACAATAACGGCCGGGGAGACTCTGATGGTGGTGGTAGCAGTGGTGGTCGTAGCAGCATGTGGATTGAGAGGGAACACATGTTTGATAAGGTTGTTACGCCGAGCGATGTTGGAAAACTCAACCGCCTTGTTATACCGAAGCAACACGCAGAGAAGTACTTCCCGCTGGATTCATCAACAAATGAGAAAGGACTACTGTTGAACTTTGAAGATCGGAGCGGAAAGCCATGGCGATTCCGATACTCTTATTGGAATAGCAGCCAGAGTTATGTGATGACGAAAGGCTGGAGTCGGTTCGTGAAAGAGAAGAAGCTTGATGCAGGCGATACCGTGTCGTTCGAGCGTGGGATCGGTGAGTTAGGCAAGGACCGTCTGTATATCGACTGGAGGCGTCGGCCTGATGCACCAGACAATGCATCACTGTCGTCTCTACCCCTCCTGCACCCGCTCTCCTTGCCCCAATCAGTCCCATGGGACCGACTATTCTTGCGGCCGTCAAACACATCTGTGAATTACGACCTTCATCATCATCATCGCAACCAAACTAGTTACAGTGGTAGCACTTATGGTTACAATGGTGTAAATTCAGGGTCAGGTTTTTACCTGAGATCATCAGCCCCACAACAGGTTGGGGTAGTGCAACAGGGTGGGGATGTGCCCATGGTATTCGACTCCGTGCCAGTGGTCCATGGTAAGGCTGCAGCCAAGCGAGTTAGGCTGTTTGGTGTGAACCTGGAGTGTCCCATATCGGAGGACCACGAATGCGACGTATTGTCCTCGACTACAATGCAGCATACAACAATGGCTTCTCTCTCTCTTCCTCCCCAATTCAGGCTCTACAATGGCGCTCCACTACCGACAATGCCAACCGAGTCGCCAAACAAAGAGAAACAATCCTTGTCCTTCAATTTGAATATCTGA 1218 0.4934 MEFVQGKEGYCEEDEEMIGDMGKFLFASSSSFSPSSYQYKGVLPQPNGRWGAQIDENQQRSSLGSFESEEGAALQFHGHEVVTNFNQKVELMNFLPRNNDNNGRGDSDGGGSSGGRSSMWIEREHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSTNEKGLLLNFEDRSGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDTVSFERGIGELGKDRLYIDWRRRPDAPDNASLSSLPLLHPLSLPQSVPWDRLFLRPSNTSVNYDLHHHHRNQTSYSGSTYGYNGVNSGSGFYLRSSAPQQVGVVQQGGDVPMVFDSVPVVHGKAAAKRVRLFGVNLECPISEDHECDVLSSTTMQHTTMASLSLPPQFRLYNGAPLPTMPTESPNKEKQSLSFNLNI* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00064 405 MobiDBLite consensus disorder prediction 96 114 - -
Eupl08g00064 405 SMART B3_2 127 232 IPR003340 GO:0003677
Eupl08g00064 405 Pfam B3 DNA binding domain 127 231 IPR003340 GO:0003677
Eupl08g00064 405 SMART rav1_2 38 92 IPR001471 GO:0003700|GO:0006355
Eupl08g00064 405 SUPERFAMILY DNA-binding domain 38 87 IPR016177 GO:0003677
Eupl08g00064 405 CDD B3_DNA 125 214 IPR003340 GO:0003677
Eupl08g00064 405 ProSiteProfiles AP2/ERF domain profile. 38 95 IPR001471 GO:0003700|GO:0006355
Eupl08g00064 405 FunFam B3 domain-containing protein 120 241 - -
Eupl08g00064 405 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 35 360 IPR044800 GO:0003700
Eupl08g00064 405 ProSiteProfiles B3 DNA-binding domain profile. 127 232 IPR003340 GO:0003677
Eupl08g00064 405 MobiDBLite consensus disorder prediction 96 118 - -
Eupl08g00064 405 SUPERFAMILY DNA-binding pseudobarrel domain 124 221 IPR015300 -
Eupl08g00064 405 MobiDBLite consensus disorder prediction 386 405 - -
Eupl08g00064 405 Gene3D - 121 239 IPR015300 -
Eupl08g00064 405 Gene3D AP2/ERF domain 37 88 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00064 Eupl-Chr8 1610449 1612432 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00064 122 346 RAV Transcription Factor Family AT2G46870 56.356 9.10e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Eupl08g00064 B3 2e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00064 K09287 - nnu:104593229 489.189