Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00060 ATGGCGGGGTCGTTTTCGAAAACTCCAAGAGAGAAGGTAGTGGAGTCTTTGAAATCTCTGCCGGTGGGATGCAGGTTTCATCCTACGGACGAAGAGCTCGTGAATCACTTCTTACCGTTGAAGATCGAAGGAAAGGAATCGGAAGTGGAGGTGATCCAAGAAGTTGATGTTTGTAAGTGGGAGCCATGGGAATTGGCAGAGCAATTGAAGATTAGGTCGGATGATTCTGAGTGGTTCTGCTTTTACCGCCTTGATCGGAAGGGGAAGCATCCAAATGGTGTTCTTATGAAGAGGTCAACGAAACGAGGGTTTTGGAAATCCACCGGACAGGATCGGCATATCAAGTCTCGATCGTCTGGCATGAACTTAATTGCTACAAAGAAGACACTAGTTTTCTACATAGGACGTGCTCCTAAGGGTGAGAAGACCAACTGGATAATGCACGAGTATCGCATCAAAGAGAAGGAGAACGACGGCACAAACGGCAAACAGGGTGCAGACCTTGTTATCTGTCGCTTAAAGAAGCCCGATGAGAGCACTGAAAATTCGAACGGTGATGAAATAGGATCAAGTCGCTCCTCTCCTATTGCAACCAAATTTTCTCCTGAAGCTACGTCATCAAAGCAAGTAACAGCGTCTGATATACGTGACGGAAGGCAACAGAGCAACAACAGTAGCTATATACAAGTGAGAGTGATAGATGGAGAAGTAAGAGATATGGAGGTGGATCCGCTGCTGGACGAGGAGGAAGATTTGAGGAGGATATATGAAACACTTGGGTCAATCTCCCCAAAGCACGACGGGCTAGGATCTTCTTACATGGATTCCAGCTTTGTCGTCGGTGACTATATGGAGATGCCGTTTCAAGATGGCACGGATGGGCAGGACATCTCTGTCGTCCGTAATTTCATTAATTACTCACGGGGTTCAGGACCATGTGATTCAAGAAGTACATATCGTCTTGGTAAACAAGTACATGAGCTAGCTTCATCAGTTTCTCGGATTAGCTTGTCACAGGAGGAACCCAAGGCAAAAACTAAGCCCGAAGAGAAGACAGAGGAGAAGAAAGATGTAAAAGCAGAAGAAAAAAGAGAGGAGCCAAAGAAGATAGAGAGATCCACCATGAAATTCAGAGGAGTTGATGAACAAACTAAACAGGAGGAACCCAAGAAAGTAACTAAGACAGAAGAGAAGAGAGAGGAAAAGAAAGATGAAAAAGCAGAAGAAAAAAAGGAGGCAAAGCCACGATCCCCTGTTGTCTTGCTTGTAGACTTGCATTGTGAAGGCTGTGCAAAGAAGATAAAGAGATCCATCAAGAAATTCGAAGGTCTCTCTCTCTCTCGCTCTCGTTCATAA 1356 0.4513 MAGSFSKTPREKVVESLKSLPVGCRFHPTDEELVNHFLPLKIEGKESEVEVIQEVDVCKWEPWELAEQLKIRSDDSEWFCFYRLDRKGKHPNGVLMKRSTKRGFWKSTGQDRHIKSRSSGMNLIATKKTLVFYIGRAPKGEKTNWIMHEYRIKEKENDGTNGKQGADLVICRLKKPDESTENSNGDEIGSSRSSPIATKFSPEATSSKQVTASDIRDGRQQSNNSSYIQVRVIDGEVRDMEVDPLLDEEEDLRRIYETLGSISPKHDGLGSSYMDSSFVVGDYMEMPFQDGTDGQDISVVRNFINYSRGSGPCDSRSTYRLGKQVHELASSVSRISLSQEEPKAKTKPEEKTEEKKDVKAEEKREEPKKIERSTMKFRGVDEQTKQEEPKKVTKTEEKREEKKDEKAEEKKEAKPRSPVVLLVDLHCEGCAKKIKRSIKKFEGLSLSRSRS* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00060 451 MobiDBLite consensus disorder prediction 332 418 - -
Eupl08g00060 451 MobiDBLite consensus disorder prediction 183 223 - -
Eupl08g00060 451 CDD HMA 425 443 IPR006121 GO:0046872
Eupl08g00060 451 SUPERFAMILY NAC domain 17 175 IPR036093 GO:0003677|GO:0006355
Eupl08g00060 451 MobiDBLite consensus disorder prediction 340 417 - -
Eupl08g00060 451 Gene3D NAC domain 29 180 IPR036093 GO:0003677|GO:0006355
Eupl08g00060 451 ProSiteProfiles NAC domain profile. 20 176 IPR003441 GO:0003677|GO:0006355
Eupl08g00060 451 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 19 346 - -
Eupl08g00060 451 MobiDBLite consensus disorder prediction 175 223 - -
Eupl08g00060 451 Coils Coil 392 412 - -
Eupl08g00060 451 Pfam No apical meristem (NAM) protein 21 152 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00060 Eupl-Chr8 1505739 1522557 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00060 11 300 NAC Transcription Factor Family AT1G33060 41.896 2.79e-60 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Eupl08g00060 NAM 1.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00060 - - tss:122661115 243.817