Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl08g00056 ATGGCAAGGTCGTTTTTGGAAAATATGCCGGTGGGATTCAGATTTCATCCTTTGGACGAAGAGCTCCTGAATCACTACTTACGGGGGAAGATCGAAGGAAGGAAATTGAAAGTGGAGGTGATTCCAGAAGTTGATATTTGGAAGTGGGAGCCATGGGACTTGCCAGACCTATCGGTGATTATTAAGTCGGATGATCCAGAGTGGTACTTCTTTTCCCGTATTGATCGGAAGAGTGAAAAAAGTTCTCGTTGTAAAAGGTCGACGAAAGCCGGGTTCTGGAAACCAACTGGAAAGGATCGAAAGGTCAAGTCTTGGTCTGGCAGGAACGTGATTGGTTGGAAGAAGACACTAGTTTACTACAAAGGGCGTGCTTCTAAGTGTGAGAGGACCAACTGGTTAATGCACGAGTATCGCGTCAATGAGAAGGCCAAGCAGGGTGATTTTGTTCTCTGTCGCTTATTCAAGAAGTCCGATGAGAACACACAGAATTCGAACTGTAATGAAATGGAACCAACTGGCTCTTCTCCTGAAGCTACGCCATTAAACCAAGCATTCGTTCTAACTACTACAGAGTCAGATATAGGTTCAGTTGTGAAAGATGGAGAAACAGAAGAGGATCAACATCCACTGCTGAAAGAGTATGAAGATTCTAGGGTGTTCTTGCATGAGCTAAGGGAATATAACTGCACGCTTTACACTGCTGAAAGCAGTGACTTTGTTTATGTCTATAACGAGATGCCGTTACAGGATGGCAGTTATGAGCAGGCCGTCTTTACTGCAGAAATGATCGAGGAACTTTGCAATCAGCAGGATGAGAGCACGTTCCATGGTTTCAGGGAATGTGATTCAGTGTTCCAGGGGTTTTATTCTTTGGGAAAGCACAAATTGCATATATTCCTCCTGAGAAGCTCTCCAAAAGGCGCAGCCGCATGCGAAGGATATTTCCGGATAGTGATCGACTGGCCTCATCGCTATTAG 978 0.4489 MARSFLENMPVGFRFHPLDEELLNHYLRGKIEGRKLKVEVIPEVDIWKWEPWDLPDLSVIIKSDDPEWYFFSRIDRKSEKSSRCKRSTKAGFWKPTGKDRKVKSWSGRNVIGWKKTLVYYKGRASKCERTNWLMHEYRVNEKAKQGDFVLCRLFKKSDENTQNSNCNEMEPTGSSPEATPLNQAFVLTTTESDIGSVVKDGETEEDQHPLLKEYEDSRVFLHELREYNCTLYTAESSDFVYVYNEMPLQDGSYEQAVFTAEMIEELCNQQDESTFHGFRECDSVFQGFYSLGKHKLHIFLLRSSPKGAAACEGYFRIVIDWPHRY* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl08g00056 325 Pfam No apical meristem (NAM) protein 10 139 IPR003441 GO:0003677|GO:0006355
Eupl08g00056 325 Gene3D NAC domain 19 161 IPR036093 GO:0003677|GO:0006355
Eupl08g00056 325 ProSiteProfiles NAC domain profile. 9 156 IPR003441 GO:0003677|GO:0006355
Eupl08g00056 325 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 207 - -
Eupl08g00056 325 SUPERFAMILY NAC domain 6 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl08g00056 Eupl-Chr8 1455641 1458738 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl08g00056 1 272 NAC Transcription Factor Family AT4G35580 41.781 2.45e-61 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Eupl08g00056 NAM 6.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl08g00056 - - tss:122661115 234.958